Skip to content
Snippets Groups Projects
Select Git revision
  • 101_provider_metakeyupdate
  • 102
  • 102_provider_metakeyupdate
  • 102_testdbpatching
  • 102_versionbump
  • 103_provider_metakeyupdate
  • 103_testdbpatch
  • 103_versionbump
  • 104_testdbpatch
  • 104_versionbump
  • 105_version_bump
  • 108_schema_patch
  • 108_versionbump
  • 109_versionbump
  • Bugfix/ComparaTest
  • Bugfix/CompressedHexDb
  • Bugfix/CompressedHexDb_103
  • Bugfix/Null_translation_id
  • Bugfix/PingErrorMsg
  • Bugfix/TestDbs
  • cpan/113.0.0
  • cpan/112.0.0
  • cvs/release/ensembl/74
  • cvs/release/ensembl/73
  • cvs/attic/branch-e73-db-portability
  • cvs/attic/tag-ensemblgenomes-20-73
  • cvs/release/ensemblgenomes/20-73
  • cvs/attic/unconventional_removal_branch
  • cvs/attic/api_cleanup
  • cvs/attic/unconventional_removal
  • cvs/attic/api_removal
  • cvs/attic/remove_dnac
  • cvs/attic/branch-switchable_adaptors
  • cvs/attic/branch-additional_id_cache
  • cvs/attic/branch-e72-db-portability
  • cvs/attic/branch-e71-db-portability
  • cvs/release/ensembl/72
  • cvs/attic/ensembl_all_alleles
  • cvs/attic/branch-expression_data
  • cvs/release/ensemblgenomes/19-72
40 results
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.07Aug6432131Jul3027262524232019181613119543229Jun282726252322212019181514131211876131May30292824232221171615141098632127Apr26252423201918171613121110543130Mar29282724232221201916151462129Feb28272624added early exit conditions :added method get_total to give an estimate of the total number of features expectedadded gene_display_xref_sourcesusing array reference rather than an arrayupdated transcript_display_xref_sources and added gene_display_xref_sourcesarrays/hashes updatesmethod get_total adds an estimate of maximum number of features expectedadded get_total method which gives an indication of how many features are expectedupdated transcript_display_xref_sources and added gene_display_xref_sourcesupdated transcript_display_xref_sources and added gene_display_xref_sourcesupdated transcript_display_xref_sources and added gene_display_xref_sourcesno need to override method transcript_display_xref_sources - diplay xrefs are done in OfficialNaming.pm for zebrafishadded API support for karyotype attributeTwo commits. First is to use a custom factory to let us default to embl, genbank dumps and allow user override [ENSCORESW-226]. Secondly our pipeline was not RC_NAME friendly. We now inherit the default options from hive generic conf and add our own [ENSCORESW-225]A more "new hive" rc name amenable version[ENSCORESW-224]. Fix for multi-line SQ lines caused by large sequences being pushed through SeqDumper. Brought across from HEAD.cvs/release/ens…cvs/release/ensemblgenomes/15-68[ENSCORESW-224]. Fix for multi-line SQ lines caused by large sequences being pushed through SeqDumper. Was never an issue before as our slices were never big enough. Applied the same fix to Genbank but it should be less of an issue due to it's formatting meaning we need larger slices to cause the issue.updated docs*** empty log message ***Added a single warning for running without a CCDS database, and provided an exit for certain no-data situations.Basic tests for TranscriptSelector.pmNew utility object for finding canonical transcripts. Refactoring of "set_canonical_transcript.pl" logic.supports different dbtyperemoved pepstats for otherfeatures databasesRemoved a bug in get_all_alt_locations for negative strand cases.Check for existing aliasespeptide stats not needed for otherfeatures databasesadded tokensadded dna db for vega and otherfeatures databasesadded constitutive exon runemail summary for otherfeatures/vega handover runadded method remove_source_priorities; it's called from xref_mapper.pl when option -recalc_display_xrefs is usedchanged option -recalc_display_xrefs to boolean, it wasn't possible to recalculate display xrefs without using the xref dbconstitutive exon analysis added to pipelineconstitutive exon analysis added to the pipelinedbtype is an argument, so it can be run on core, vega, otherfeatures...updated instructionsdon't parse ArrayExpress xrefsremove user and pass method call from methid newdelete user and pass method calls