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Created with Raphaël 2.2.014Sep13121110654330Aug2924232221201716151413109876432131Jul3027262524232019181613119543229Jun282726252322212019181514131211876131May30292824232221171615141098632127Apr26252423201918171613121110543MySQL binary was wrongPushing pig specific hacks for the naming of transcripts and the overwriting of xref pipeline assigned values (in a similar way we do for zfish)removed debugwrong return type for slices[ENSCORESW-253]. Adding a "hack" to temporarily wave the sub sequence remaps if we've got lrgs.Don't run density scripts on patches.Fix for parsing files from Ken @ CSHL. ORIGIN was used in another context apart from notifying the start of the sequence in a genbank a.thaliana filedo not re-run officialnaming when trying to recalculate the display xrefs, it will not workClassification bugs spotted by mm14Added mustela_putorius_furo and xiphophorus_maculatus to the list of species to which we project.for gene display xref, ignore gene xrefs where uniprot_genename is dependent on a low-evidence uniprot entrydo not use uniprot_genename as display xref if the master xref it is dependent on is of low evidencedo not run only on pre databasesno need to use a hash of the species name when the species name is hard-codedspecial trick to store features on Yspace after platyfish removedAdded sources for Nasonia vitripennis (jewel wasp).Bringing over changes from HEAD into branch 68 to ensure Rest API can be deployed from one CVS tagThe old way was possibly the WORST way to blank a LRU cache by replacing it for a bare hash. Possible memory leak fixed ...Foreach better than while .. i thinkAdded pongo pyg thingy as an alias so the xrefs work for one sourceadded empty line before =cutget_slice method specific for gene countget_slice method addedmemory requirements adjusted in regard to latest pipeline runsAdding patch from James Allen where a copy/paste bug has meant the incorrect setting of end_Exon to be on the $translation and not alternative $translationwrong database name usedmisc-scripts/xref_mapping/XrefParser/curated_transcriptParser.pmAdded correct logic name. Production DB also updated.warn if you're working on the live db serverincrease width of param tableadded failsafe, do not get repeat features if slice is too bigsome disconnection for safetyUnfinished first effort at script.got the key and value invertedDelete uniparc xrefs and object_xrefs before uploading the mappingsAdded original stable ID for reference.missing run_all and max_run optionsadded a get_total method for snp densityadjust the total count summing