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Created with Raphaël 2.2.014Feb131298765131Jan3029252423221918171615121110985432122Dec19654130Nov27242321109763231Oct252423201918111065327Sep252221201918131131Aug3024232117109872124Jul201917121110654328Jun27232116141396131May262419171110327Apr2013117428Mar232221171332128Feb2722151487131Jan30272625241817965415Dec139829Nov2421181611974228Oct2120141311754329Sep272623222120161514131286231Aug2625221918171615121153227Jul2521201911875128Jun2423171614109732131May252417161110identation to improve readabilityreverted biotype_id attribute to biotype in gene and transcript[ENSCORESW-2325]. Take note of the fix.[ENSCORESW-2325]. Temporary fix to take into account unavailability of next release DBs on the live server when adding the version upgrade to the following one. Also, switch to the default port.activated fallback on overloadschema_version updated to 93refactored _get_mdz_chunks codeMerge branch 'master' of https://github.com/Ensembl/ensembl into alignment_storage[ENSCORESW-2612]. Send notification only when build status changes, on_success defaults to 'change' accoring to documentation.replaced use base with use parentadded new_fast() to Biotype and used it from BiotypeAdaptorcomments updated. Exception added to Biotype::object_type()updated biotype functionality to mimic legacy behaviour of setting through biotype() and defaulting to 'protein_coding'biotype functions in Gene and Transcript replaced to use new Biotype objectCode refactored after reviewMerge branch 'master' of https://github.com/Ensembl/ensembl into alignment_storagecustom download for HGNCallow https as well as httpAdded preliminary BiotypeAdaptor and Biotype object, with accessor methods in Gene and Trancript[ENSCORESW-2595] Implement a dodge to avoid Travis-specific perl segfault around disconnect_if_idle(); At present the issue only appears in gene.t and we may presume it isn't affecting real use.consistent description retrievalstandardise display xref assignmentSimplify travis config again now scope of problem is known.Added biotype tableAdded routines to handle unsupported method callsTrial threaded perl on Travis.Merge branch 'master' of https://github.com/Ensembl/ensembl into alignment_storageBroaden the net to see whether it is only perl 5.26 on the travis docker image which is failing gene.tclean up Xenbase descriptionuse GPFF parser for all RefSeq datastore link to NCBIGene where availableuse correct field delimiterAdjust Travis config to reflect planned supported versions of Perl[ENSCORESW-2541]. Implementation using mutable interval trees, likely to be more correct than the previous flat structure version.[ENSCORESW-2145]. Robust update wrt the parent status.[ENSCORESW-2541]. Invoke accessor/mutator, consider edge cases.[ENSCORESW-2541]. Wasn't updating the tree size accordingly.[ENSCORESW-2541]. Another public method.[ENSCORESW-2541]. Support for getting the size of the (mutable) interval tree.[ENSCORESW-2541]. Leave the choice and the details of which implementation to use available.