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Created with Raphaël 2.2.02Apr30Mar2927252423222120191615141312987652128Feb27262322212019161514131211987652131Jan2926252423221917161512111098543221Dec201918161513128765130Nov29282724222120181716141310987632131Oct30272625242320191817161312104228Sep272625222120191815141312117654131Aug3029211817Make factor type default to NULLPRIMARY_DB_SYN -> PRIMARY_DB_SYNONYMChanged NULL in output files to \N so that it's recognised as a "proper" null value when imported into MySQL.*** empty log message ****** empty log message ***added --dry_run, removed --mapping_session_id, other fixesscore is no longer an attribute of ArchiveStableId (this is now handled by StableIdEvent); history tree consolitation and untangling callsconsolidate and untangle tree, added PODadded pod, get_attribute() and ident_string()score is no longer an attribute of ArchiveStableId (this is now handled by StableIdEvent)added notes about new StableIdHistoryTree codeCorrected documentation for created_date() and modified_date() - they actually use a UNIX time integer value, not a MySQL date.Fixed typo (= instead of eq) that was causing search regions to be deleted when enhancers were loaded!Added marker.display_marker_synonym_id->marker_synonymDon't write name projection info to database.Wait for human-mouse to finish before running mouse-human. May prevent table contention.Prevent race condition which could lead to confusing results if two projections to the same target (e.g. human-dog and mouse-dog) were run in parallel.Uncommented entry of AgilentCGH into human source_url (had been erroneouslyTweak to GO job naming. Updated for release 44.Typo.More checking.Removed some no-longer-needed checks.Much refactoring to improve performance - all Compara stuff is now done initially and cached.general tidyAdd Rat Exon 1.0 ST arrayRemoved some extraneous tabs.*** empty log message ***changed the gene description sources order so that it is the same as transcript_display_xrefsSimplified queryCorrect extensionScript from Ewan to generate web stats for EBIvega production attributescheck for valid csource namessource anme changesAdd type column. blank list checktriage stuff moved to the endchanges from code review implemented. Principally the reduction of some duplicated code. Also for the generation of display_xref_ids do not use those where the display_label is just a number. Also perl -w now runs with no warnings. Ah yes and also the triage stuff is now done right at the end as this was done before the pair calculation before which made writing the xrefs for the pairs more complicated than was needed.Vega_transcript is used for something else, make it Vega_mouse_transcript.Added Vega_mouse_transcript.