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Created with Raphaël 2.2.020Apr1918171613121110543130Mar29282724232221201916151462129Feb282726242322212017161514131098762131Jan3025242319181716131211109654323Dec22212019141312987652130Nov292524232221181715121110987432131Oct28272625242120191817141312POD corrections*** empty log message ***correcting "End coord + 1 is less then start coord" error messagesAPI version upAllowing the API call to fetch back terms which have a distance of 0 i.e. linked at the current level. This is to be used with cautionPOD correctionsAllowing people to comment on web dataAdded the method "get_all_somatic_StructuralVariationFeatures"Cleaned up overly escaped code examples.Spelling of environment corrected in POD.In initial_stable_id():Really the user does not need to be able to do select into outfile. copy paste errorAppend accession number to the display label.Bug created and I didn't run the test cases.Do not do meta_coord calculations for the ditag table.Getter/setter for the header functionAdded note about =head2 in DESCRIPTION section, and corrected a typo.Fixed some icky PODdon't strip off the SSF prefixfile format changedupdated MIM2GENE source urlcroaking when '--(db)host' isn't passed, adding -D to the list of options recognized for --dbname (after MySQL), improving readability of the dba_opts data structuredocumentation updatesSupporting passing args into the Gzip layerstore density features in batchstore density features in batchcount only stored density featurescount only density features which have been storedchanged result title format as request by Paul/Dan Smake sure dbs flagged as having variation positions changed have a variation dbRound number serialisation okTesting if avoiding formatted writer speeds up our serialiserRemoved problematic (!defined $release_file) test.Updates for VectorBase speciesextended memory limit for exonerate jobsadded config for turkeyAdding the method is_chromosome to the Slice object. This kind of method is not nice but does deal with a lot of issues with seq_regions being attached to chromosome coordinate systems which are infact unassembled regions.Setting small start to 0. This should be a safe thing to do looking at the currently logic usage.Header function should not be responsbile for the addition of a > for the FASTA header. That's the serailisers responsiblity. Also removed major DB dependencyHeader function should not be responsbile for the addition of a > for the FASTA header. That's the serailisers responsiblity