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Created with Raphaël 2.2.016Sep1513987231Aug262322191716151211985432129Jul282725222018141387654130Jun29272422212017161514131098732131May2726252420191817161210954329Apr282726252221201918171514121187654131Mar302924232221181715141312111098742128Feb2524211817161514111098743231Jan28272625201918171413121110765423Dec212017161514131098Add second texonomy ID for different strain of anophelesSupport for having multiple taxon IDs for the same species - species.species_id no longer primary/unique.Support for separating out predicted Swissprot & TrEMBL entries.Corrected package line..Z->.gzCorrected unigene for a.g.Added _predicted equivalents for Uniprot/SWISSPROT, Uniprot/Trembl, EMBL and protein_idFixed confilicting idsAdded metadata for Anopheles. Will probably need tweaking.Species-specific stuff for anopheles; for now just use defaults. Should be OK - may need to add description filtering later.Added AgilentProbe and AgilentCGHUpdated for new cisred file format in version 1.2More informative error if missing analysisa bug fix to column allele_string in transcript_variation table. The error is caused by a deletion, such as TTG/- in CTTGTT so the allele_string should be LV/L rather than LV/-regulatory_feature_transcript->regulatory_feature_codingFixed SQLAdded entry for ZFIN expression patterns.Made regulatory_factor and regulatory_feature part of enum in object_xref so that they can have xrefs assigned to them.Created; currently just has regulatory factor schema changes (nothing else declared)This commit was manufactured by cvs2svn to create branch 'branch-cvs/release/ens…cvs/release/ensembl/33 release/33 upstream/release/33Changed spaces to tab so that db_display_label for AFFY_HC_G110 is picked upchanges from branch-vega-31-devchanges from branch-vega-31-devused new rearrangeuse GENES file now insteadbug in affy feature retrieval from database, too many featuresAdded cowRemoved $self from call to Bio::EnsEMBL::Utils::Exception::throw inreplaced do with eval require for better error messages. Added optional argument to load_all to write to stderr what configuration file is being used. This was always reported before but defualt is now not toadd synonym data fro mouse MGI datamouse synonyms added for MGI datacheck and fix if one external database source is associated with more than one ensembl object typeuse CORE::length not just lengthParser for cisRed database dumpsParser for miRanda micro-RNA regualtory featuresCommon functionality shared between parsers for different types of regulatory featuresNew version, with modular parsersonly get seq if seq object is not null. If null return an empty stringReturn undef if seq no sequence after stop codon removedChange display name for HUGO to "HGNC Symbol"