new zmap release notes for 4 December 2009

doc/Release_notes/release_notes.2009_12_04.shtml

+<!-- File automatically generated. Do not edit. --!>
+
+<!--#set var="banner" value="ZMap Release Notes For ' 4 December 2009'" -->
+<!--#include virtual="/perl/header" -->
+<!--#set var="author" value="edgrif@sanger.ac.uk" -->
+
+<!-- The release version, etc... --!>
+
+<h5>Release Version: ZMap 0.1.74 </h5>
+
+
+<h5>Release Date:  4 December 2009</h5>
+
+
+<p>
+(Last release was on 02/12/2009)
+</p>
+
+<h5>Request Tracker Tickets Resolved</h5>
+<br />
+<!-- Now the resolved tickets... --!>
+
+<!-- Finished getting the resolved request tracker tickets --!>
+
+<fieldset><legend>acedb</legend>
+
+<ul>
+<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=150541">150541</a>, Resolved (Fri Dec 04 10:17:18 2009)
+<p>4.9.47 -> 4.8.48 EST alignment via Homol_homol.</p>
+<p>pad@sanger.ac.uk</p>
+</li>
+</ul>
+
+</fieldset><br />
+
+<!-- End of tickets  --!>
+
+<fieldset>
+<legend>ZMap Changes/Fixes [from cvs]</legend>
+
+<ul>
+  <li><!-- --- Start editing ZMap changes here... --- --!>
+    <a href="http://cvs.internal.sanger.ac.uk/cgi-bin/viewcvs.cgi/ZMap/?root=zmap">Browse CVS</a>
+
+  </li>
+  <li> doc/Release_notes/release_notes.2009_12_02.shtml: new zmap
+	  release notes for  2 December 2009
+
+
+  </li>
+  <li> src/include/ZMap/zmapWebPages.h: update release notes file to
+	  release_notes.2009_12_02.shtml
+
+
+  </li>
+  <li> doc/Release_notes/LAST_RELEASE_DATE.txt: update last release
+	  notes to 02/12/2009
+
+
+  </li>
+  <li> src/zmapUtils/zmapUtils_P.h:
+	  /var/tmp/zmap.13503/ZMap/scripts/versioner run by zmap
+
+
+  </li>
+  <li> src/zmapApp/zmapAppconnect.c: avoid displaying misleading error
+	  message.
+
+
+  </li>
+  <li> src/zmapFeature/zmapFeatureContext.c: fix revcomp display of
+	  assembly path.
+
+
+  </li>
+  <li> src/zmapGFF/zmapGFF2parser.c: added warning string to genomic
+	  cannonical warning if known name not given - was NULL
+
+
+  </li>
+  <li> src/zmapUtils/zmapUtilsSpawn.c: iffed out unused functions: see
+	  libpfetch
+
+
+  </li>
+  <li> src/: include/ZMap/zmapConfigIni.h,
+	  include/ZMap/zmapConfigLoader.h,
+	  include/ZMap/zmapConfigStrings.h, zmapConfig/zmapConfigIni.c,
+	  zmapUtils/zmapConfigLoader.c: added functions to get style
+	  stanzas from list of names
+
+
+  </li>
+  <li> src/: include/ZMap/zmapView.h, zmapApp/zmapApp_P.h,
+	  zmapServer/zmapServerProtocolHandler.c,
+	  zmapServer/zmapServerPrototype.h, zmapServer/pipe/pipeServer.c,
+	  zmapServer/pipe/pipeServer_P.h: added code for pipeServer
+
+
+  </li>
+  <li> src/zmapView/zmapView.c: fixed bug where multiple servers reqired
+	  the first to have sequence=true
+
+
+  </li>
+  <li> src/zmapView/zmapViewUtils.c: added code for pipeServer
+
+
+  </li>
+  <li> src/zmapFeature/zmapStyleUtils.c: get style stanzas by name
+
+
+  </li>
+  <li> src/zmapUtils/zmapUrl.c: added pipe protocol
+
+
+  </li>
+  <li> src/zmapApp/zmapAppwindow.c: added + removed scripts_dir from
+	  config
+
+
+  </li>
+  <li> src/zmapControl/zmapControlWindowMenubar.c: added code for
+	  pipeServer
+
+    <!-- --- End editing ZMap changes here... --- --!>
+  </li>
+</ul>
+</fieldset>
+<br />
+<fieldset>
+<legend>Aceb Changes/Fixes [from cvs]</legend>
+<ul>
+  <li><!-- --- Start editing ACeDB changes here... --- --!>
+    <a href="http://cvs.internal.sanger.ac.uk/cgi-bin/viewcvs.cgi/acedb/?root=acedb">Browse CVS</a>
+
+  </li>
+  <li> w9/blxview.c: Fixed a bug where text in highlighted rows was not
+	  visible. Also made a change to allow coords in the input file to
+	  be either way round for the match sequence (because acedb and
+	  zmap currently output them different ways for reversed strands).
+
+
+  </li>
+  <li> w9/: blixem_.h, blxparser.c, blxview.c, translate.c: Fixed a bug
+	  where the input match sequence (which is always the forward
+	  strand) was not being complemented if the match is on the reverse
+	  strand. Also made a change to allow the coords in the gaps array
+	  to be in any order.
+
+
+  </li>
+  <li> w9/blxview.c, w9/translate.c, wmake/truemake: remove dependence
+	  on translate.c by giface, move sortValues() to it can be linked
+	  to blxNN progs.
+
+    <!-- --- End editing ACeDB changes here... --- --!>
+  </li>
+</ul>
+</fieldset>
+<br />
+
+<!--#include virtual="/perl/footer" -->
+