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Commit 40048f2d authored by edgrif's avatar edgrif
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add 3 frame variations. rationalise bump names. add calls to set strand, frame.

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src/include/ZMap/zmapStyle.h
+ 46
− 34
View file @ 40048f2d
......@@ -26,9 +26,9 @@
* Description: Style and Style set handling functions.
*
* HISTORY:
* Last edited: Jun 25 14:51 2008 (rds)
* Last edited: Aug 29 11:43 2008 (edgrif)
* Created: Mon Feb 26 09:28:26 2007 (edgrif)
* CVS info: $Id: zmapStyle.h,v 1.23 2008-06-25 13:59:24 rds Exp $
* CVS info: $Id: zmapStyle.h,v 1.24 2008-09-24 14:31:50 edgrif Exp $
*-------------------------------------------------------------------
*/
#ifndef ZMAP_STYLE_H
......@@ -61,6 +61,16 @@ _(ZMAPSTYLE_COLDISPLAY_SHOW,) /**< Always show. */
ZMAP_DEFINE_ENUM(ZMapStyleColumnDisplayState, ZMAP_STYLE_COLUMN_DISPLAY_LIST);
#define ZMAP_STYLE_3_FRAME_LIST(_) \
_(ZMAPSTYLE_3_FRAME_INVALID,) /**< invalid mode */ \
_(ZMAPSTYLE_3_FRAME_ALWAYS,) /**< Display normally and as 3 cols in 3 frame mode. */ \
_(ZMAPSTYLE_3_FRAME_ONLY_3,) /**< Only dislay in 3 frame mode as 3 cols. */ \
_(ZMAPSTYLE_3_FRAME_ONLY_1,) /**< Only display in 3 frame mode as 1 col. */
ZMAP_DEFINE_ENUM(ZMapStyle3FrameMode, ZMAP_STYLE_3_FRAME_LIST);
/* Specifies the style of graph. */
#define ZMAP_STYLE_GRAPH_MODE_LIST(_) \
_(ZMAPSTYLE_GRAPH_INVALID,) /**< Initial setting. */ \
......@@ -125,31 +135,30 @@ _(ZMAPOVERLAP_COMPLETE,) /* draw on top - default */ \
_(ZMAPOVERLAP_OVERLAP,) /* bump if feature coords overlap. */ \
_(ZMAPOVERLAP_POSITION,) /* bump if features start at same coord. */ \
_(ZMAPOVERLAP_NAME,) /* one column per homol target */ \
_(ZMAPOVERLAP_COMPLEX,) /* all features with same name in a
single column, several names in one
column but no 2 features overlap. */ \
_(ZMAPOVERLAP_COMPLEX_RANGE,) /* All features with same name in a
single column if they overlap the
focus range, all other features in
a single column. */ \
_(ZMAPOVERLAP_NO_INTERLEAVE,) /* all features with same name in a
single column, several names in one
column but no interleaving of sets
of features. */ \
_(ZMAPOVERLAP_ENDS_RANGE,) /* Sort by 5' and 3' best/biggest
matches, one match per column, very
fmap like but better... */ \
_(ZMAPOVERLAP_COMPLEX_LIMIT,) /* Constrain matches to be colinear
within range or are truncated. */ \
_(ZMAPOVERLAP_OSCILLATE,) /* Oscillate between one column and another...
_(ZMAPOVERLAP_OSCILLATE,) /* Oscillate between one column and another... \
Useful for displaying tile paths. */ \
_(ZMAPOVERLAP_ITEM_OVERLAP,) /* bump if item coords overlap in canvas space... */ \
_(ZMAPOVERLAP_SIMPLE,) /* one column per feature, for testing... */ \
_(ZMAPOVERLAP_END,)
_(ZMAPOVERLAP_ENDS_RANGE,) /* Sort by 5' and 3' best/biggest \
matches, one match per column, very \
fmap like but better... */ \
_(ZMAPOVERLAP_COMPLEX_INTERLEAVE,)/* all features with same name in a \
single sub-column, several names in one \
column but no 2 features overlap. */ \
_(ZMAPOVERLAP_COMPLEX_NO_INTERLEAVE,) /* as ZMAPOVERLAP_COMPLEX but no interleaving of \
features with different names. */ \
_(ZMAPOVERLAP_COMPLEX_RANGE,) /* All features with same name in a \
single column if they overlap the \
'mark' range, all other features in \
a single column. */ \
_(ZMAPOVERLAP_COMPLEX_LIMIT,) /* As ZMAPOVERLAP_COMPLEX_RANGE but constrain matches \
to be colinear within range or are truncated. */
ZMAP_DEFINE_ENUM(ZMapStyleOverlapMode, ZMAP_STYLE_OVERLAP_MODE_LIST) ;
#define ZMAPOVERLAP_START ZMAPOVERLAP_INVALID
#define ZMAPOVERLAP_START ZMAPOVERLAP_COMPLETE
#define ZMAPOVERLAP_END ZMAPOVERLAP_COMPLEX_LIMIT
/* Note the naming here in the macros. ZMAP_TYPE_FEATURE_TYPE_STYLE seemed confusing... */
......@@ -196,12 +205,14 @@ void zMapStyleDestroy(ZMapFeatureTypeStyle style);
gboolean zMapStyleNameCompare(ZMapFeatureTypeStyle style, char *name) ;
gboolean zMapStyleDisplayValid(ZMapFeatureTypeStyle style, GError **error) ;
gboolean zMapStyleIsTrueFeature(ZMapFeatureTypeStyle style) ;
GQuark zMapStyleGetID(ZMapFeatureTypeStyle style) ;
GQuark zMapStyleGetUniqueID(ZMapFeatureTypeStyle style) ;
char *zMapStyleGetDescription(ZMapFeatureTypeStyle style) ;
gboolean zMapStyleIsDrawable(ZMapFeatureTypeStyle style, GError **error) ;
void zMapStyleMakeDrawable(ZMapFeatureTypeStyle style) ;
gboolean zMapStyleGetColoursCDSDefault(ZMapFeatureTypeStyle style,
GdkColor **background, GdkColor **foreground, GdkColor **outline) ;
gboolean zMapStyleIsColour(ZMapFeatureTypeStyle style, ZMapStyleDrawContext colour_context) ;
......@@ -227,20 +238,28 @@ gboolean zMapStyleIsDirectionalEnd(ZMapFeatureTypeStyle style) ;
void zMapStyleSetDisplayable(ZMapFeatureTypeStyle style, gboolean displayable) ;
gboolean zMapStyleIsDisplayable(ZMapFeatureTypeStyle style) ;
void zMapStyleSetDeferred(ZMapFeatureTypeStyle style, gboolean displayable) ;
gboolean zMapStyleIsDeferred(ZMapFeatureTypeStyle style) ;
void zMapStyleSetLoaded(ZMapFeatureTypeStyle style, gboolean deferred) ;
gboolean zMapStyleIsLoaded(ZMapFeatureTypeStyle style) ;
void zMapStyleSetDisplay(ZMapFeatureTypeStyle style, ZMapStyleColumnDisplayState col_show) ;
ZMapStyleColumnDisplayState zMapStyleGetDisplay(ZMapFeatureTypeStyle style) ;
gboolean zMapStyleIsHidden(ZMapFeatureTypeStyle style) ;
void zMapStyleSetShowWhenEmpty(ZMapFeatureTypeStyle style, gboolean show_when_empty) ;
gboolean zMapStyleGetShowWhenEmpty(ZMapFeatureTypeStyle style);
gboolean zMapStyleIsFrameSpecific(ZMapFeatureTypeStyle style) ;
void zMapStyleSetStrandSpecific(ZMapFeatureTypeStyle type, gboolean strand_specific) ;
void zMapStyleSetStrandShowReverse(ZMapFeatureTypeStyle type, gboolean show_reverse) ;
void zMapStyleSetFrameSpecific(ZMapFeatureTypeStyle type, ZMapStyle3FrameMode frame_mode) ;
void zMapStyleGetStrandAttrs(ZMapFeatureTypeStyle type,
gboolean *strand_specific, gboolean *show_rev_strand, ZMapStyle3FrameMode *frame_mode) ;
gboolean zMapStyleIsStrandSpecific(ZMapFeatureTypeStyle style) ;
gboolean zMapStyleIsShowReverseStrand(ZMapFeatureTypeStyle style) ;
gboolean zMapStyleIsFrameSpecific(ZMapFeatureTypeStyle style) ;
gboolean zMapStyleIsFrameOneColumn(ZMapFeatureTypeStyle style) ;
double zMapStyleGetWidth(ZMapFeatureTypeStyle style) ;
double zMapStyleGetMaxScore(ZMapFeatureTypeStyle style) ;
......@@ -279,12 +298,6 @@ gboolean zMapStyleFormatMode(char *mode_str, ZMapStyleMode *mode_out) ;
void zMapStyleSetScore(ZMapFeatureTypeStyle style, double min_score, double max_score) ;
void zMapStyleSetGraph(ZMapFeatureTypeStyle style, ZMapStyleGraphMode mode, double min, double max, double baseline) ;
void zMapStyleSetStrandAttrs(ZMapFeatureTypeStyle type,
gboolean strand_specific, gboolean frame_specific,
gboolean show_rev_strand, gboolean show_as_3_frame) ;
void zMapStyleGetStrandAttrs(ZMapFeatureTypeStyle type,
gboolean *strand_specific, gboolean *frame_specific,
gboolean *show_rev_strand, gboolean *show_as_3_frame) ;
void zMapStyleSetEndStyle(ZMapFeatureTypeStyle style, gboolean directional) ;
void zMapStyleSetGappedAligns(ZMapFeatureTypeStyle style, gboolean parse_gaps, unsigned int within_align_error) ;
......@@ -297,9 +310,6 @@ gboolean zMapStyleIsParseGaps(ZMapFeatureTypeStyle style) ;
gboolean zMapStyleIsAlignGaps(ZMapFeatureTypeStyle style) ;
void zMapStyleSetAlignGaps(ZMapFeatureTypeStyle style, gboolean show_gaps) ;
void zMapStyleSetGlyphMode(ZMapFeatureTypeStyle style, ZMapStyleGlyphMode glyph_mode) ;
char *zMapStyleCreateName(char *style_name) ;
......@@ -313,7 +323,9 @@ gboolean zMapFeatureTypeSetAugment(GData **current, GData **new) ;
void zMapStyleInitOverlapMode(ZMapFeatureTypeStyle style,
ZMapStyleOverlapMode default_overlap_mode, ZMapStyleOverlapMode curr_overlap_mode) ;
void zMapStyleSetBumpSpace(ZMapFeatureTypeStyle style, double bump_spacing) ;
void zMapStyleSetBump(ZMapFeatureTypeStyle type, char *bump) ;
double zMapStyleGetBumpSpace(ZMapFeatureTypeStyle style) ;
ZMapStyleOverlapMode zMapStyleGetOverlapMode(ZMapFeatureTypeStyle style) ;
void zMapStyleSetOverlapMode(ZMapFeatureTypeStyle style, ZMapStyleOverlapMode overlap_mode) ;
ZMapStyleOverlapMode zMapStyleResetOverlapMode(ZMapFeatureTypeStyle style) ;
......
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