new zmap release notes for 25 July 2008

doc/Release_notes/release_notes.2008_07_25.shtml

+<!-- File automatically generated. Do not edit. --!>
+
+<!--#set var="banner" value="ZMap Release Notes For '25 July 2008'" -->
+<!--#include virtual="/perl/header" -->
+<!--#set var="author" value="edgrif@sanger.ac.uk" -->
+
+<!-- The release version, etc... --!>
+
+<h5>Release Version: ZMap 0.1.52 </h5>
+
+
+<h5>Release Date: 25 July 2008</h5>
+
+
+<p>
+(Last release was on 09/07/2008)
+</p>
+
+<h5>Request Tracker Tickets Resolved</h5>
+<br />
+<!-- Now the resolved tickets... --!>
+
+<!-- Finished getting the resolved request tracker tickets --!>
+
+<fieldset><legend>zmap</legend>
+
+<ul>
+<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=66175">66175</a>, Resolved (Thu Jul 17 11:39:29 2008)
+<p>Genomic Features don't get saved</p>
+<p>mp7@sanger.ac.uk</p>
+</li>
+<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=67919">67919</a>, Resolved (Thu Jul 17 16:09:09 2008)
+<p>DNA sequence disappearing when zoom in</p>
+<p>af2@sanger.ac.uk</p>
+</li>
+<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=70447">70447</a>, Resolved (Thu Jul 17 16:07:46 2008)
+<p>zmap crash whilst trying to pfetch</p>
+<p>ib2@sanger.ac.uk</p>
+</li>
+<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=70981">70981</a>, Resolved (Thu Jul 17 16:12:40 2008)
+<p>zmap crash</p>
+<p>ib2@sanger.ac.uk</p>
+</li>
+<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=72434">72434</a>, Resolved (Fri Jul 18 09:01:37 2008)
+<p>[zmapXMLParser] XML Document free? Memory leak ?</p>
+<p>mms@sanger.ac.uk</p>
+</li>
+<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=72817">72817</a>, Resolved (Wed Jul 16 15:25:01 2008)
+<p>feature request: ability to unselect all objects</p>
+<p>lw2@sanger.ac.uk</p>
+</li>
+</ul>
+
+</fieldset><br />
+
+<fieldset><legend>acedb</legend>
+
+<ul>
+<li>Ticket No.<a href="https://rt.sanger.ac.uk/rt/Ticket/Display.html?id=71116">71116</a>, Resolved (Thu Jul 17 15:29:00 2008)
+<p>genetic map - colours of genes</p>
+<p>mt3@sanger.ac.uk</p>
+</li>
+</ul>
+
+</fieldset><br />
+
+<!-- End of tickets  --!>
+
+<fieldset>
+<legend>ZMap Changes/Fixes [from cvs]</legend>
+
+<ul>
+  <li><!-- --- Start editing ZMap changes here... --- --!>
+    <a href="http://cvs.internal.sanger.ac.uk/cgi-bin/viewcvs.cgi/ZMap/?root=zmap">Browse CVS</a>
+
+  </li>
+  <li> doc/Release_notes/release_notes.2008_07_09.shtml: new zmap
+	  release notes for  9 July 2008
+
+
+  </li>
+  <li> src/include/ZMap/zmapWebPages.h: update release notes file to
+	  release_notes.2008_07_09.shtml
+
+
+  </li>
+  <li> doc/Release_notes/LAST_RELEASE_DATE.txt: update last release
+	  notes to 09/07/2008
+
+
+  </li>
+  <li> src/zmapUtils/zmapUtils_P.h:
+	  /var/tmp/zmap.26844/ZMap/scripts/versioner run by zmap
+
+
+  </li>
+  <li> src/perl/X11-XRemote-0.01/Makefile.PL: Need to unshift X11 lib
+	  and inc dirs onto paths or they are not picked up
+
+
+  </li>
+  <li> src/: include/ZMap/zmapUtils.h, zmapUtils/zmapFileUtils.c: add r,
+	  w or x tests to zMapFileAccess().
+
+
+  </li>
+  <li> src/zmapWindow/zmapWindowDrawFeatures.c: remove unused variable.
+
+
+  </li>
+  <li> src/zmapView/zmapViewCallBlixem.c: add code to handle blixem
+	  configuration file cmdline arg.
+
+
+  </li>
+  <li> src/zmapConfig/zmapConfig.c: add new mode param to
+	  zMapFileAccess() call.
+
+
+  </li>
+  <li> src/: include/ZMap/zmapWebPages.h, zmapUtils/zmapGUIutils.c: Add
+	  entries for separate keyboard/mouse usage file.
+
+
+  </li>
+  <li> src/zmapWindow/zmapWindowItemFactory.c: comment out for now an
+	  assert that causes zmap to crash during bumping.
+
+    <!-- --- End editing ZMap changes here... --- --!>
+  </li>
+</ul>
+</fieldset>
+<br />
+<fieldset>
+<legend>Aceb Changes/Fixes [from cvs]</legend>
+<ul>
+  <li><!-- --- Start editing ACeDB changes here... --- --!>
+    <a href="http://cvs.internal.sanger.ac.uk/cgi-bin/viewcvs.cgi/acedb/?root=acedb">Browse CVS</a>
+
+  </li>
+  <li> wmake/makefile: add pfetch libraries targets for http pfetch.
+
+
+  </li>
+  <li> wmake/truemake: add targets for blixem http version.
+
+
+  </li>
+  <li> wh/blxview.h: add missing includes for basic acedb libs.
+
+
+  </li>
+  <li> w9/blxview.c: move pfetch stuff to blxFetch.c, use new config
+	  stuff to check pfetch options.
+
+
+  </li>
+  <li> w9/blxmain.c: add new -c option for config file. Add code to read
+	  config.
+
+
+  </li>
+  <li> w9/blixem_.h: add missing includes, add config file defs. and
+	  funcs.
+
+
+  </li>
+  <li> w9/blxFetch.c: new file for pfetching and config file reading.
+
+
+  </li>
+  <li> wmake/truemake: add libpfetch/libcurl builds for blixemh.
+
+
+  </li>
+  <li> w9/blixem_.h: add sequence type enum for dna and peptide.
+
+
+  </li>
+  <li> w9/blxFetch.c: deal with peptide an dna. Add stats for fetches.
+	  Fix bugs in 'no auth' and 'no match' handling. Fix bug in
+	  unfinished sequence handling.
+
+
+  </li>
+  <li> w3/gifacemain.c, w3/tacemain.c, w3/xacemain.c,
+	  wsocket/serverace.c: add -writeaccess cmdline option so prog.
+	  starts with write access.
+
+
+  </li>
+  <li> wsocket/serverace.c: fix stupid bit of message coding by
+	  me...sigh...
+
+
+  </li>
+  <li> w9/blxview.c: fix buffer overrun with long sequence names...only
+	  a hack though, really needs gstrings.
+
+
+  </li>
+  <li> wsocket/serverace.c: add test for -init option to force database
+	  reinit.
+
+    <!-- --- End editing ACeDB changes here... --- --!>
+  </li>
+</ul>
+</fieldset>
+<br />
+
+<!--#include virtual="/perl/footer" -->
+