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ensembl-gh-mirror
zmap
Commits
5446ff56
Commit
5446ff56
authored
16 years ago
by
edgrif
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Add code to check feature sets and styles
parent
aafaa1eb
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1 changed file
src/zmapServer/zmapServerProtocolHandler.c
+107
-48
107 additions, 48 deletions
src/zmapServer/zmapServerProtocolHandler.c
with
107 additions
and
48 deletions
src/zmapServer/zmapServerProtocolHandler.c
+
107
−
48
View file @
5446ff56
...
...
@@ -25,9 +25,9 @@
* Description:
* Exported functions: See ZMap/zmapServerProtocol.h
* HISTORY:
* Last edited:
Feb 8 15:21
2008 (edgrif)
* Last edited:
Aug 29 14:03
2008 (edgrif)
* Created: Thu Jan 27 13:17:43 2005 (edgrif)
* CVS info: $Id: zmapServerProtocolHandler.c,v 1.2
6
2008-0
6-10 15:05:20 rds
Exp $
* CVS info: $Id: zmapServerProtocolHandler.c,v 1.2
7
2008-0
9-24 14:48:37 edgrif
Exp $
*-------------------------------------------------------------------
*/
...
...
@@ -68,6 +68,13 @@ typedef struct
}
ZMapProtocolInitListStruct
,
*
ZMapProtocolInitList
;
typedef
struct
{
GData
*
all_styles
;
gboolean
found_style
;
GString
*
missing_styles
;
}
FindStylesStruct
,
*
FindStyles
;
static
void
protocolGlobalInitFunc
(
ZMapProtocolInitList
protocols
,
ZMapURL
url
,
...
...
@@ -81,6 +88,9 @@ static ZMapThreadReturnCode getSequence(ZMapServer server, ZMapServerReqGetSeque
static
ZMapThreadReturnCode
getServerInfo
(
ZMapServer
server
,
ZMapServerReqGetServerInfo
request
,
char
**
err_msg_out
)
;
static
ZMapThreadReturnCode
terminateServer
(
ZMapServer
*
server
,
char
**
err_msg_out
)
;
static
gboolean
haveRequiredStyles
(
GData
*
all_styles
,
GList
*
required_styles
,
char
**
missing_styles_out
)
;
static
void
findStyleCB
(
gpointer
data
,
gpointer
user_data
)
;
/* Set up the list, note the special pthread macro that makes sure mutex is set up before
* any threads can use it. */
static
ZMapProtocolInitListStruct
protocol_init_G
=
{
PTHREAD_MUTEX_INITIALIZER
,
NULL
}
;
...
...
@@ -264,9 +274,10 @@ static ZMapThreadReturnCode openServerAndLoad(ZMapServerReqOpenLoad request, ZMa
ZMapServerReqFeatureSets
feature_sets
=
&
request
->
feature_sets
;
ZMapServerReqNewContext
context
=
&
request
->
context
;
ZMapServerReqGetFeatures
features
=
&
request
->
features
;
GList
*
required_styles
=
NULL
;
char
*
missing_styles
=
NULL
;
/* Create the thread block for this specific server thread. */
/* Create the thread block for this server connection. */
if
(
!
zMapServerCreateConnection
(
&
server
,
global_init_data
,
open
->
url
,
open
->
format
,
open
->
timeout
,
...
...
@@ -285,7 +296,8 @@ static ZMapThreadReturnCode openServerAndLoad(ZMapServerReqOpenLoad request, ZMa
thread_rc
=
ZMAPTHREAD_RETURNCODE_REQFAIL
;
}
/* Get server information. */
/* Get server information (version etc). */
if
(
thread_rc
==
ZMAPTHREAD_RETURNCODE_OK
&&
zMapServerGetServerInfo
(
server
,
&
(
get_info
->
database_path_out
))
!=
ZMAP_SERVERRESPONSE_OK
)
{
...
...
@@ -294,10 +306,34 @@ static ZMapThreadReturnCode openServerAndLoad(ZMapServerReqOpenLoad request, ZMa
}
/* We may have been supplied with the styles by the caller, if not then retrieve all
* available styles from the server. */
/* Check the feature set name list, or if the list is NULL get all feature set names.
* I think we should not allow NULL for the feature set names, caller should have to say.... */
if
(
thread_rc
==
ZMAPTHREAD_RETURNCODE_OK
)
{
/* We could return a set of required styles here....to use below in checking the styles we need. */
if
(
zMapServerFeatureSetNames
(
server
,
&
(
feature_sets
->
feature_sets
),
&
required_styles
)
!=
ZMAP_SERVERRESPONSE_OK
)
{
*
err_msg_out
=
g_strdup_printf
(
zMapServerLastErrorMsg
(
server
))
;
thread_rc
=
ZMAPTHREAD_RETURNCODE_REQFAIL
;
}
else
{
/* Got the feature sets so record them in the server context. */
context
->
context
->
feature_set_names
=
feature_sets
->
feature_sets
;
}
}
/* We may have been supplied with the styles by the caller, if so then some extra checking
* needs to be added to check them against the feature sets.
* Otherwise ask the server for the list of styles, we pass in the feature_set list as the
* the server may use this to make sure all required styles are available. */
if
(
thread_rc
==
ZMAPTHREAD_RETURNCODE_OK
)
{
/* I THINK WE NEED TO GET THE PREDEFINED HERE FIRST AND THEN MERGE.... */
if
(
!
(
styles
->
styles
))
{
if
(
zMapServerGetStyles
(
server
,
&
(
styles
->
styles
))
...
...
@@ -308,6 +344,11 @@ static ZMapThreadReturnCode openServerAndLoad(ZMapServerReqOpenLoad request, ZMa
}
else
{
#ifdef ED_G_NEVER_INCLUDE_THIS_CODE
zMapFeatureTypePrintAll
(
styles
->
styles
,
"Before merge"
)
;
#endif
/* ED_G_NEVER_INCLUDE_THIS_CODE */
/* Some styles are predefined and do not have to be in the server,
* do a merge of styles from the server with these predefined ones. */
context
->
context
->
styles
=
zMapStyleGetAllPredefined
()
;
...
...
@@ -316,14 +357,34 @@ static ZMapThreadReturnCode openServerAndLoad(ZMapServerReqOpenLoad request, ZMa
zMapStyleDestroyStyles
(
&
(
styles
->
styles
))
;
#ifdef ED_G_NEVER_INCLUDE_THIS_CODE
zMapFeatureTypePrintAll
(
context
->
context
->
styles
,
"Before inherit"
)
;
#endif
/* ED_G_NEVER_INCLUDE_THIS_CODE */
/* Now we have all the styles do the inheritance for them all. */
if
(
!
zMapStyleInheritAllStyles
(
&
(
context
->
context
->
styles
)))
zMapLogWarning
(
"%s"
,
"There were errors in inheriting styles."
)
;
#ifdef ED_G_NEVER_INCLUDE_THIS_CODE
zMapFeatureTypePrintAll
(
context
->
context
->
styles
,
"After inherit"
)
;
#endif
/* ED_G_NEVER_INCLUDE_THIS_CODE */
}
}
}
/* Make sure that all the styles that are required for the feature sets were found.
* (This check should be controlled from analysing the number of feature servers or
* flags set for servers.....) */
if
(
!
haveRequiredStyles
(
context
->
context
->
styles
,
required_styles
,
&
missing_styles
))
{
*
err_msg_out
=
g_strdup_printf
(
"The following required Styles could not be found on the server: %s"
,
missing_styles
)
;
g_free
(
missing_styles
)
;
thread_rc
=
ZMAPTHREAD_RETURNCODE_REQFAIL
;
}
/* Find out if the styles will need to have their mode set from the features. */
if
(
thread_rc
==
ZMAPTHREAD_RETURNCODE_OK
)
{
...
...
@@ -336,47 +397,6 @@ static ZMapThreadReturnCode openServerAndLoad(ZMapServerReqOpenLoad request, ZMa
}
/* If there is no feature set list then get the list of all feature sets from the server. */
if
(
thread_rc
==
ZMAPTHREAD_RETURNCODE_OK
)
{
if
(
!
(
feature_sets
->
feature_sets
))
{
if
(
zMapServerGetFeatureSets
(
server
,
&
(
feature_sets
->
feature_sets
))
!=
ZMAP_SERVERRESPONSE_OK
)
{
*
err_msg_out
=
g_strdup_printf
(
zMapServerLastErrorMsg
(
server
))
;
thread_rc
=
ZMAPTHREAD_RETURNCODE_REQFAIL
;
}
else
{
/* Got the types so record them in the server context. */
context
->
context
->
feature_set_names
=
feature_sets
->
feature_sets
;
}
}
}
#ifdef ED_G_NEVER_INCLUDE_THIS_CODE
/* WE SHOULD BE DOING THIS OTHERWISE HOW CAN BE SURE WE CAN DO THE DISPLAY ? BUT ON THE
* OTHER HAND WHAT IF STYLES FROM ANOTHER SERVER ???? */
/* I've removed a whole load of acedb-centric stuff here but I've left this as a reminder that
we may wish to check feature_sets/styles more carefully at some stage. */
if
(
!
zMapSetListEqualStyles
(
&
(
context
->
context
->
feature_set_names
),
&
(
context
->
context
->
styles
)))
{
*
err_msg_out
=
g_strdup
(
"The styles available from the server do not match"
" the list of required styles."
)
;
thread_rc
=
ZMAPTHREAD_RETURNCODE_REQFAIL
;
}
#endif
/* ED_G_NEVER_INCLUDE_THIS_CODE */
/* Create a sequence context from the sequence and start/end data. */
if
(
thread_rc
==
ZMAPTHREAD_RETURNCODE_OK
&&
zMapServerSetContext
(
server
,
context
->
context
)
...
...
@@ -428,6 +448,7 @@ static ZMapThreadReturnCode openServerAndLoad(ZMapServerReqOpenLoad request, ZMa
if
(
thread_rc
==
ZMAPTHREAD_RETURNCODE_OK
&&
(
features
->
type
==
ZMAP_SERVERREQ_SEQUENCE
||
features
->
type
==
ZMAP_SERVERREQ_FEATURE_SEQUENCE
)
&&
(
zMap_g_list_find_quark
(
context
->
context
->
feature_set_names
,
zMapStyleCreateID
(
ZMAP_FIXED_STYLE_DNA_NAME
)))
&&
zMapServerGetContextSequences
(
server
,
context
->
context
)
!=
ZMAP_SERVERRESPONSE_OK
)
{
*
err_msg_out
=
g_strdup_printf
(
zMapServerLastErrorMsg
(
server
))
;
...
...
@@ -536,3 +557,41 @@ static ZMapThreadReturnCode terminateServer(ZMapServer *server, char **err_msg_o
static
gboolean
haveRequiredStyles
(
GData
*
all_styles
,
GList
*
required_styles
,
char
**
missing_styles_out
)
{
gboolean
result
=
FALSE
;
FindStylesStruct
find_data
=
{
NULL
}
;
;
find_data
.
all_styles
=
all_styles
;
g_list_foreach
(
required_styles
,
findStyleCB
,
&
find_data
)
;
if
(
find_data
.
missing_styles
)
*
missing_styles_out
=
g_string_free
(
find_data
.
missing_styles
,
FALSE
)
;
result
=
find_data
.
found_style
;
return
result
;
}
/* GFunc() */
static
void
findStyleCB
(
gpointer
data
,
gpointer
user_data
)
{
GQuark
style_id
=
GPOINTER_TO_INT
(
data
)
;
FindStyles
find_data
=
(
FindStyles
)
user_data
;
style_id
=
zMapStyleCreateID
((
char
*
)
g_quark_to_string
(
style_id
))
;
if
((
zMapFindStyle
(
find_data
->
all_styles
,
style_id
)))
find_data
->
found_style
=
TRUE
;
else
{
if
(
!
(
find_data
->
missing_styles
))
find_data
->
missing_styles
=
g_string_sized_new
(
1000
)
;
g_string_append_printf
(
find_data
->
missing_styles
,
"%s "
,
g_quark_to_string
(
style_id
))
;
}
return
;
}
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