routines to handle translation of dna to peptide. Currently only supports standard genetic code.

src/include/ZMap/zmapPeptide.h

+/*  File: zmapPeptide.h
+ *  Author: Ed Griffiths (edgrif@sanger.ac.uk)
+ *  Copyright (c) Sanger Institute, 2006
+ *-------------------------------------------------------------------
+ * ZMap is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ * 
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
+ * or see the on-line version at http://www.gnu.org/copyleft/gpl.txt
+ *-------------------------------------------------------------------
+ * This file is part of the ZMap genome database package
+ * originated by
+ * 	Ed Griffiths (Sanger Institute, UK) edgrif@sanger.ac.uk,
+ *      Roy Storey (Sanger Institute, UK) rds@sanger.ac.uk,
+ *      Rob Clack (Sanger Institute, UK) rnc@sanger.ac.uk
+ *
+ * Description: Functions to translate dna to peptide.
+ *
+ * HISTORY:
+ * Last edited: Mar 15 15:38 2006 (edgrif)
+ * Created: Tue Mar 14 13:55:27 2006 (edgrif)
+ * CVS info:   $Id: zmapPeptide.h,v 1.1 2006-03-17 17:09:35 edgrif Exp $
+ *-------------------------------------------------------------------
+ */
+#ifndef ZMAP_PEPTIDE_H
+#define ZMAP_PEPTIDE_H
+
+
+#include <glib.h>
+
+typedef struct _ZMapPeptideStruct *ZMapPeptide ;
+
+
+
+ZMapPeptide zMapPeptideCreate(char *sequence_name, char *gene_name,
+			      char *dna, GArray *translation_table, gboolean include_stop) ;
+int zMapPeptideLength(ZMapPeptide peptide) ;
+char *zMapPeptideSequence(ZMapPeptide peptide) ;
+char *zMapPeptideSequenceName(ZMapPeptide peptide) ;
+char *zMapPeptideGeneName(ZMapPeptide peptide) ;
+void zMapPeptideDestroy(ZMapPeptide peptide) ;
+
+
+#endif /* !ZMAP_PEPTIDE_H */
+