Skip to content
Snippets Groups Projects
Commit f3b981ba authored by rds's avatar rds
Browse files

Use new zmapEnum.h 

#ifdef'd out gobject stuff
temporarily include zmapStyle_I.h as this file will be removed.
parent e45d5596
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
src/zmapFeature/zmapStyle_P.h
+ 3
− 312
View file @ f3b981ba
......@@ -26,325 +26,16 @@
* Description: Private header for style.
*
* HISTORY:
* Last edited: Apr 21 11:43 2008 (rds)
* Last edited: Jun 10 11:32 2008 (rds)
* Created: Mon Feb 26 09:13:30 2007 (edgrif)
* CVS info: $Id: zmapStyle_P.h,v 1.11 2008-04-21 15:25:10 rds Exp $
* CVS info: $Id: zmapStyle_P.h,v 1.12 2008-06-12 21:02:36 rds Exp $
*-------------------------------------------------------------------
*/
#ifndef ZMAP_STYLE_P_H
#define ZMAP_STYLE_P_H
/* TEMP....WHILE I MOVE STYLE STUFF IN HERE.... */
#include <ZMap/zmapFeature.h>
#include <ZMap/zmapStyle.h>
/*! @addtogroup zmapstyles
* @{
* */
/*! @struct ZMapStyleColour zmapStyle_P.h
* @brief ZMap object colours
*
* All ZMap objects can potentially have a border colour, a fill colour and a draw colour
* which can be used to "draw" over the fill colour. */
typedef struct
{
struct
{
unsigned int draw : 1 ;
unsigned int fill : 1 ;
unsigned int border : 1 ;
} fields_set ;
GdkColor draw ; /* Overlaid on fill colour. */
GdkColor fill ; /* Fill/background colour. */
GdkColor border ; /* Surround/line colour. */
} ZMapStyleColourStruct, *ZMapStyleColour ;
/*! @struct ZMapStyleFullColour zmapStyle_P.h
* @brief ZMap feature colours
*
* All features in ZMap can be selected and hence must have both "normal" and "selected"
* colours. */
typedef struct
{
ZMapStyleColourStruct normal ;
ZMapStyleColourStruct selected ;
} ZMapStyleFullColourStruct, *ZMapStyleFullColour ;
/*! Styles have different modes, e.g. graph, alignment etc, information specific to a particular
* style is held in its own struct. */
/*! @struct ZMapBasicGraph zmapStyle_P.h
* @brief Basic feature
*
* < currently this is empty > */
typedef struct
{
char *dummy ;
} ZMapStyleBasicStruct, *ZMapBasicGraph ;
/*! @struct ZMapSequenceGraph zmapStyle_P.h
* @brief Sequence feature
*
* (currently this is empty) */
typedef struct
{
char *dummy ;
} ZMapStyleSequenceStruct, *ZMapSequenceGraph ;
/*! @struct ZMapTextGraph zmapStyle_P.h
* @brief Text feature
*
* (currently this is empty) */
typedef struct
{
char *dummy ;
} ZMapStyleTextStruct, *ZMapTextGraph ;
/*! @struct ZMapStyleGraph zmapStyle_P.h
* @brief Graph feature
*
* Draws a feature as a graph, the feature must contain graph points. */
typedef struct
{
struct
{
unsigned int mode : 1 ;
unsigned int baseline : 1 ;
} fields_set ; /*!< Fields set. */
ZMapStyleGraphMode mode ; /*!< Graph style. */
double baseline ; /*!< zero level for graph. */
} ZMapStyleGraphStruct, *ZMapStyleGraph ;
/*! @struct ZMapStyleGlyph zmapStyle_P.h
* @brief Glyph feature
*
* Draws shapes of various kinds, e.g. splice site indicators etc. */
typedef struct
{
struct
{
unsigned int unused : 1 ;
} fields_set ; /*!< Fields set. */
ZMapStyleGlyphMode mode ; /*!< Glyph style. */
} ZMapStyleGlyphStruct, *ZMapStyleGlyph ;
/*! @struct ZMapStyleAlignment zmapStyle_P.h
* @brief Alignment feature
*
* Draws an alignment as a series of blocks joined by straight lines. The lines can be coloured
* to indicate colinearity between adjacent blocks. */
typedef struct
{
struct
{
unsigned int within_align_error : 1 ;
unsigned int between_align_error : 1 ;
} fields_set ; /*!< Fields set. */
/*! Allowable align errors, used to decide whether a match should be classified as "perfect".
* within_align_error is used to assess the blocks in a single gapped alignment if align_gaps = TRUE
* between_align_error is used to assess several alignments (e.g. for exon matches) if join_homols = TRUE
*
* Number is allowable number of missing bases between blocks/alignments, default is 0. */
unsigned int within_align_error ;
unsigned int between_align_error ;
/*! Colours for bars joining up intra/inter alignment gaps. */
ZMapStyleFullColourStruct perfect ;
ZMapStyleFullColourStruct colinear ;
ZMapStyleFullColourStruct noncolinear ;
/* State for alignments. */
struct
{
unsigned int pfetchable : 1 ; /* TRUE => alignments have pfetch entries. */
} state ;
} ZMapStyleAlignmentStruct, *ZMapStyleAlignment ;
/*! @struct ZMapStyleTranscript zmapStyle_P.h
* @brief Transcript feature
*
* Draws a transcript as a series of boxes joined by angled lines. */
typedef struct
{
struct
{
unsigned int unused : 1 ;
} fields_set ; /*!< Fields set. */
ZMapStyleFullColourStruct CDS_colours ; /*!< Colour for CDS part of feature. */
} ZMapStyleTranscriptStruct, *ZMapStyleTranscript ;
/*! @struct ZMapFeatureTypeStyle zmapStyle_P.h
* @brief ZMap Style
*
* ZMap Style definition, the style must have a mode which specifies what sort of
* of feature the style represents. */
typedef struct ZMapFeatureTypeStyleStruct_
{
/*! _All_ styles must have these fields set, no other fields are compulsory. */
GQuark original_id ; /*!< Original name. */
GQuark unique_id ; /*!< Name normalised to be unique. */
/*! Since all these fields are optional we need flags for all of them to show whether they were
* set. */
struct
{
unsigned int parent_style : 1 ;
unsigned int description : 1 ;
unsigned int mode : 1 ;
unsigned int min_score : 1 ;
unsigned int max_score : 1 ;
unsigned int overlap_mode : 1 ;
unsigned int overlap_default : 1 ;
unsigned int bump_spacing : 1 ;
unsigned int min_mag : 1 ;
unsigned int max_mag : 1 ;
unsigned int width : 1 ;
unsigned int score_mode : 1 ;
unsigned int gff_source : 1 ;
unsigned int gff_feature : 1 ;
} fields_set ; /*!< Fields set. */
/*! Data fields for the style. */
GQuark parent_id ; /*!< Styles can inherit from other
styles, the parent style _must_ be
identified by its unique id. */
char *description ; /*!< Description of what this style
represents. */
ZMapStyleMode mode ; /*!< Specifies how features that
reference this style will be processed. */
ZMapStyleFullColourStruct colours ; /*!< Main feature colours. */
/*! Colours for when feature is shown in frames. */
ZMapStyleFullColourStruct frame0_colours ;
ZMapStyleFullColourStruct frame1_colours ;
ZMapStyleFullColourStruct frame2_colours ;
/*! Colours for when feature is shown stranded by colour */
ZMapStyleFullColourStruct strand_rev_colours;
ZMapStyleOverlapMode default_overlap_mode ; /*!< Allows return to original bump mode. */
ZMapStyleOverlapMode curr_overlap_mode ; /*!< Controls how features are grouped
into sub columns within a column. */
double bump_spacing ; /*!< gap between bumped features. */
double min_mag ; /*!< Don't display if fewer bases/line */
double max_mag ; /*!< Don't display if more bases/line */
double width ; /*!< column width */
ZMapStyleScoreMode score_mode ; /*!< Controls width of features that
have scores. */
double min_score, max_score ; /*!< Min/max for score width calc. */
/*! GFF feature dumping, allows specifying of source/feature types independently of feature
* attributes. */
GQuark gff_source ;
GQuark gff_feature ;
ZMapStyleColumnDisplayState col_display_state ; /* Controls how/when col is displayed. */
/*! State information for the style. */
struct
{
unsigned int displayable : 1 ; /* FALSE means never, ever display,
for TRUE see col_display_state. */
unsigned int show_when_empty : 1 ; /*!< If FALSE, features' column is
displayed even if there are no features. */
unsigned int showText : 1 ; /*!< Should feature text be displayed. */
unsigned int parse_gaps : 1 ;
unsigned int align_gaps : 1 ; /*!< TRUE: gaps within alignment are displayed,
FALSE: alignment is displayed as a single block. */
/*! These are all linked, if strand_specific is FALSE, then so are
* frame_specific and show_rev_strand. */
unsigned int strand_specific : 1 ; /*!< Feature that is on one strand of the dna. */
unsigned int show_rev_strand : 1 ; /*!< Only display the feature on the
reverse strand if this is set. */
unsigned int frame_specific : 1 ; /*!< Feature that is in some way linked
to the reading frame of the dna. */
unsigned int show_only_as_3_frame : 1 ; /*!< frame specific feature that should
only be displayed when all 3 frames
are shown. */
unsigned int show_only_in_separator : 1;
unsigned int directional_end : 1 ; /*!< Display pointy ends on exons etc. */
} opts ;
/*! Mode specific fields, see docs for individual structs. */
union
{
ZMapStyleBasicStruct basic ;
ZMapStyleSequenceStruct sequence ;
ZMapStyleTextStruct text ;
ZMapStyleTranscriptStruct transcript ;
ZMapStyleAlignmentStruct alignment ;
ZMapStyleGraphStruct graph ;
ZMapStyleGlyphStruct glyph ;
} mode_data ;
} ZMapFeatureTypeStyleStruct ;
/*! @} end of zmapstyles docs. */
#include <zmapStyle_I.h>
#endif /* !ZMAP_STYLE_P_H */
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment