Commits · 01cce9cc4788bf5e7db0feb3ecfb28fee580f1f3 · ensembl-gh-mirror / zmap

This project is mirrored from https://:*****@github.com/Ensembl/zmap.git. Pull mirroring updated 20 minutes ago.

Aug 23, 2010
- more · 01cce9cc
  mh17 authored 14 years ago
  
  01cce9cc
Aug 20, 2010
- add polyA and snp dumping to files for blixem. · cde1482c
  edgrif authored 14 years ago
  
  cde1482c
- fix bug in cds finding function. · 0010b9d6
  edgrif authored 14 years ago
  
  0010b9d6
Aug 18, 2010
- File to hold all RT scrips we have for our RT queues. · fb8901b6
  edgrif authored 14 years ago
  
  fb8901b6
- Add gffv3 format to blixem temp file formats, some restructuring of code. · 6f6555a0
  edgrif authored 14 years ago
  
  6f6555a0
- add function to return cds/phase of a given exon. · 95538e72
  edgrif authored 14 years ago
  
  95538e72
- add new resource strings for blixem file format. · e9cdcaa5
  edgrif authored 14 years ago
  
  e9cdcaa5
- change default alignment type to dna for motifs...this is a hack, some will be protein. · 973cd36b
  edgrif authored 14 years ago
  
  973cd36b
- add code to feature highlight func. to allow highlighting of subpart of a feature (e.g. exon). · 035b828e
  edgrif authored 14 years ago
  
  035b828e
- add trivial comments. · 3bed41c6
  edgrif authored 14 years ago
  
  3bed41c6
- add func. to test whether an item is a subpart item. · dbae9d07
  edgrif authored 14 years ago
  
  dbae9d07
- fix calls to sequencefeature object to supply current item. · d52aebdb
  edgrif authored 14 years ago
  
  d52aebdb
- add code to display text to say an alignment is gapped but we have no gap data. · 9fa2aa0c
  edgrif authored 14 years ago
  
  9fa2aa0c
- add default fill colour for 3 frame translation. · c602ab83
  edgrif authored 14 years ago
  
  c602ab83
- add function to test whether an alignment is gapped. · e58d5a56
  edgrif authored 14 years ago
  
  e58d5a56
Aug 16, 2010
- EST masking and featuresets · d12a8b7c
  mh17 authored 14 years ago
  
  d12a8b7c
Aug 11, 2010
- document that we need to remove the common phase field from zmapfeature. · 62d213d3
  edgrif authored 14 years ago
  
  62d213d3
- fix bug causing gff export to crash, missing styles list, fix bugs in... · 339ca84b
  edgrif authored 14 years ago
```
fix bug causing gff export to crash, missing styles list, fix bugs in formatting _phase_ (not frame !).
```
  339ca84b
Aug 10, 2010
- need features dumped, not just featuresets. · 5e9b5948
  edgrif authored 14 years ago
  
  5e9b5948
- fix bug, wrong widget passed in to file chooser. · a07c3be7
  edgrif authored 14 years ago
  
  a07c3be7
- fix bug in hiding features, wrongly rebumped. Add 'Update' shortcut. · 4af69f72
  edgrif authored 14 years ago
  
  4af69f72
- add new 'u' shortcut for updating a columns display. · 17d0e7b6
  edgrif authored 14 years ago
  
  17d0e7b6
- add comment warning that this is a generated file so should not be edited. · b0ae0fff
  edgrif authored 14 years ago
  
  b0ae0fff
Aug 09, 2010
- convert a whole load of g_value UINTs to INTs, this is a bad mistake, the rest... · 1e4232f2
  edgrif authored 14 years ago
```
convert a whole load of g_value UINTs to INTs, this is a bad mistake, the rest of our code expects INTs.
```
  1e4232f2
- fix printf errors, should _always_ have a format string. · 46774833
  edgrif authored 14 years ago
  
  46774833
- temp. for team laptop, needs i386 flag for compiles until macports 64 bit version installed. · a370ab96
  edgrif authored 14 years ago
  
  a370ab96
Aug 03, 2010
- ok · 9c5be33d
  mh17 authored 14 years ago
  
  9c5be33d
- new-file · ff9260a4
  mh17 authored 14 years ago
  
  ff9260a4
Jul 30, 2010
- /var/tmp/zmap.29125/ZMap/scripts/versioner run by zmap · b8517c0f
  zmap authored 14 years ago
  
  b8517c0f
Jul 29, 2010
- /var/tmp/zmap.4711/ZMap/scripts/versioner run by zmap · 224e406b
  zmap authored 14 years ago
  
  RELEASE_0-1-93
  
  224e406b
- fix bad name look up for transcript sets. · 31add164
  edgrif authored 14 years ago
  
  RELEASE_0-1-92
  
  31add164
- remove debug output. · c42afd42
  edgrif authored 14 years ago
  
  c42afd42
- add defines for prop strings, add code to support chars/base mapping,... · c7bc6a96
  edgrif authored 14 years ago
```
add defines for prop strings, add code to support chars/base mapping, essentially to zooming. Fix endless bugs with text coords. Fix bugs in property setting.
```
  c7bc6a96
- fix whole load of coord problems with displaying peptides. fix memory free... · a60c6335
  edgrif authored 14 years ago
```
fix whole load of coord problems with displaying peptides. fix memory free bug. Add missing deselect calls.
```
  a60c6335
- add comment about hash etc, encapsulation seems broken. · 2aa40df2
  edgrif authored 14 years ago
  
  2aa40df2
- - · 3f513492
  mh17 authored 14 years ago
  
  3f513492
- add function to return background item size. · 24a02427
  edgrif authored 14 years ago
  
  24a02427
- add new 3 frame state stuff. rationalise/add new sequence highlighting calls.... · 898cacf6
  edgrif authored 14 years ago
```
add new 3 frame state stuff. rationalise/add new sequence highlighting calls. add new focus item call, does not unhighlight.
```
  898cacf6
- completely redo dna/pep highlighting, all was broken. fix bug in scrollto... · 3f6ac6b4
  edgrif authored 14 years ago
```
completely redo dna/pep highlighting, all was broken. fix bug in scrollto func, did not work with changed scrolled region.
```
  3f6ac6b4
- updates · f5e99a5c
  mh17 authored 14 years ago
  
  f5e99a5c