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SMBGC detection tool

Manuscript submission system project (Europe PMC plus)

Benchmarking dataset of PDB structures (various molecule types, experimental methods, weird cases etc.).

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

A basic Python-based EGA download client

Singularity in HPC

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

A simple API that runs delayed jobs. It allows to submit a job and check it's status. When a job finishes it saves the results in the NFS.

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

A few starter examples of ansible playbooks, to show features and how they work together. See http://galaxy.ansible.com for example roles from the Ansible community for deploying many popular applications.

Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib

An Ansible playbook for automated deployment of full-stack Plone servers.