ETL to migrate data from the old database to the new one
Manuscript submission system project (Europe PMC plus)
SMBGC detection tool
Benchmarking dataset of PDB structures (various molecule types, experimental methods, weird cases etc.).
Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.
A basic Python-based EGA download client
Wordpress deployment setup repo
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
A collection of XS modules to be used with the Ensembl APIs
Test libraries and harnesses used for running the Ensembl test suite
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.