Explore projects

SMBGC detection tool

Manuscript submission system project (Europe PMC plus)

Benchmarking dataset of PDB structures (various molecule types, experimental methods, weird cases etc.).

A basic Python-based EGA download client

Singularity in HPC

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies

A simple API that runs delayed jobs. It allows to submit a job and check it's status. When a job finishes it saves the results in the NFS.

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).

Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib

A collection of functional and scientific icons for EMBL-EBI sites.

Workflows as a Service

File conversion utility for the ftp redesign project

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

A few starter examples of ansible playbooks, to show features and how they work together. See http://galaxy.ansible.com for example roles from the Ansible community for deploying many popular applications.