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Exercise 2 of the ResOps training

A solution to enable building and managing a Spark/Hadoop cluster on the EMBL-EBI Codon Slurm HPC cluster

https://tsi-ccdoc.readthedocs.io/en/latest/ResOps/2019/gitlab/02_create-sample-project.html

split paired FASTQ files into chunks of nseq sequences

PDBeCIF is a lightweight pure python package for manipulating mmCIF formatted files distributed by the wwPDB. The package contains objects and modules for accessing mmCIF data. The documentation can be found at: http://pdbe.gitdocs.ebi.ac.uk/PDBeCIF/

Demo for workshop 2019-09-04