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BioBert model trained on EPMC dataset for NER task

Manuscript submission system project (Europe PMC plus)

SMBGC detection tool

Data pipeline to generate the ChEBI Ontology from the ChEBI's Postgres Database.

A basic Python-based EGA download client

Singularity in HPC

Benchmarking dataset of PDB structures (various molecule types, experimental methods, weird cases etc.).

BGC detection tool

Scripts for drupal local development using docker - intended to be a submodule mounted as /bin in drupal repo

File conversion utility for the ftp redesign project

Deployed on https://latest.visual-framework.dev/ and https://stable.visual-framework.dev/ NOTE - DO NOT COMMIT ANYTHING IN THIS REPO, THIS IS MIRROR REPO OF GITHUB. PLEASE COMMIT CHANGES IN GITHUB ONLY.

This project defines a delayed job that runs structure searches (similarity, substructure, connectivity).

Europe PMC Machine Learning Filter for Removing False Positives from Dictionary Annotations

This is the codebase for PDBe-KB REST API service