Merge requests · ensembl-gh-mirror

'defined' will return 1 if compression is provided

ensembl-io!31 · created Mar 07, 2016 by Marek Szuba release/84
- Merged
updated Dec 17, 2018
Munge for Chr in HTSAdaptor as was for BAM Adaptor

ensembl-io!39 · created May 09, 2016 by Marek Szuba master
- Closed
- 1
updated May 09, 2016
exclude samples with uncalled genotypes

ensembl-io!38 · created May 05, 2016 by Marek Szuba release/84
- Merged
- 2
updated May 06, 2016
Bio::DB::HTS requirements added to README

ensembl-io!36 · created Apr 28, 2016 by Marek Szuba master
- Merged
updated Apr 28, 2016
exclude samples with uncalled genotypes

ensembl-io!37 · created May 05, 2016 by Marek Szuba master
- Merged
updated May 05, 2016
htsfile close function added

ensembl-io!35 · created Apr 15, 2016 by Marek Szuba master
- Merged
updated Apr 15, 2016
Remove empty genotype strings

ensembl-io!34 · created Apr 12, 2016 by Marek Szuba master
- Closed
- 1
updated May 05, 2016
Fixing the test suite and bits of io

ensembl-io!33 · created Mar 23, 2016 by Marek Szuba master
- Closed
- 10
updated Apr 19, 2017
Existing TABIX functionality via Bio::DB::HTS

ensembl-io!32 · created Mar 14, 2016 by Marek Szuba master
- Merged
- 7
updated Mar 15, 2016
Alter genotype field return type

ensembl-io!30 · created Feb 23, 2016 by Marek Szuba release/83
- Merged
updated Feb 23, 2016
Alter genotype field return type

ensembl-io!29 · created Feb 23, 2016 by Marek Szuba master
- Merged
updated Feb 24, 2016
Meaningful help on HTTP::Tiny errors.

ensembl-io!28 · created Feb 12, 2016 by Dan Sheppard master
- Merged
updated Feb 18, 2016
Attempting to fix the currently breaking test suite. 0 of 6 checklist items completed

ensembl-io!27 · created Feb 04, 2016 by Marek Szuba master
- Closed
- 5
updated Mar 24, 2016
Feature/htslib adds HTSAdaptor.pm

ensembl-io!25 · created Jan 04, 2016 by Marek Szuba release/83
- Merged
updated Jan 04, 2016
Existing patches to make bigfile fail softly.

ensembl-io!23 · created Dec 03, 2015 by Dan Sheppard master
- Merged
updated Dec 03, 2015
add is_polymorphic method to aid LD genotype retrieval

ensembl-io!26 · created Jan 15, 2016 by Marek Szuba master
- Merged
updated Jan 15, 2016
Remove unnecessary dependencies

ensembl-io!24 · created Dec 11, 2015 by Marek Szuba master
- Merged
updated Dec 11, 2015
code now also checks for Chr

ensembl-io!22 · created Nov 11, 2015 by Marek Szuba master
- Merged
updated May 06, 2016
Support parsing from an already open file handle.

ensembl-io!17 · created Aug 18, 2015 by Marek Szuba master
enhancement
- Merged
- 5
updated Aug 20, 2015
Adding travis-ci tests

ensembl-io!15 · created Aug 18, 2015 by Marek Szuba master
enhancement
- Merged
- 1
updated Aug 20, 2015