Merge requests · ensembl-gh-mirror

Add cadd parser

ensembl-io!65 · created Sep 13, 2018 by Marek Szuba master
- Merged
- 2
updated Sep 21, 2018
First try for a VCF4 writer

ensembl-io!48 · created Aug 12, 2016 by Marek Szuba experimental/unified-design
- Merged
- 31
updated Jan 09, 2017
Update travis harness to point to the correct Bio-HTS lib version

ensembl-io!52 · created May 11, 2017 by Marek Szuba experimental/unified-design
- Merged
- 1
updated May 11, 2017
Update URL.pm

ensembl-io!41 · created May 20, 2016 by Marek Szuba master
- Merged
updated May 24, 2016
Update fetch_file in URL.pm

ensembl-io!42 · created May 25, 2016 by Marek Szuba master
- Merged
updated May 25, 2016
Experimental/unified design

ensembl-io!54 · created Jun 21, 2017 by Marek Szuba experimental/unified-design
- Merged
- 5
updated Jun 30, 2017
Improvements to munge_chr_id subroutine in HTSAdaptor

ensembl-io!51 · created Oct 05, 2016 by Marek Szuba master
- Merged
- 1
updated Dec 17, 2018
correct tabix header function called in PairwiseAdaptor.pm

ensembl-io!47 · created Aug 10, 2016 by Marek Szuba master
- Merged
updated Dec 17, 2018
EnsEMBL::Web::Tree changed

ensembl-io!49 · created Sep 05, 2016 by Marek Szuba master
- Merged
updated Dec 17, 2018
[ENSWEB-2126] Extra param size_limit added to avoid loading bix files

ensembl-io!45 · created Jul 13, 2016 by Marek Szuba postreleasefix/85
- Merged
updated Dec 17, 2018
call DESTROY to close tabix file

ensembl-io!43 · created May 31, 2016 by Marek Szuba master
- Merged
- 2
updated May 31, 2016
Munge for Chr in HTSAdaptor as was for BAM Adaptor

ensembl-io!40 · created May 09, 2016 by Marek Szuba master
- Merged
updated May 09, 2016
'defined' will return 1 if compression is provided

ensembl-io!31 · created Mar 07, 2016 by Marek Szuba release/84
- Merged
updated Dec 17, 2018
exclude samples with uncalled genotypes

ensembl-io!38 · created May 05, 2016 by Marek Szuba release/84
- Merged
- 2
updated May 06, 2016
Bio::DB::HTS requirements added to README

ensembl-io!36 · created Apr 28, 2016 by Marek Szuba master
- Merged
updated Apr 28, 2016
exclude samples with uncalled genotypes

ensembl-io!37 · created May 05, 2016 by Marek Szuba master
- Merged
updated May 05, 2016
htsfile close function added

ensembl-io!35 · created Apr 15, 2016 by Marek Szuba master
- Merged
updated Apr 15, 2016
Existing TABIX functionality via Bio::DB::HTS

ensembl-io!32 · created Mar 14, 2016 by Marek Szuba master
- Merged
- 7
updated Mar 15, 2016
Alter genotype field return type

ensembl-io!30 · created Feb 23, 2016 by Marek Szuba release/83
- Merged
updated Feb 23, 2016
Alter genotype field return type

ensembl-io!29 · created Feb 23, 2016 by Marek Szuba master
- Merged
updated Feb 24, 2016