removed updateFileUrl method in data-access

server/utils/db.js

@@ -16,6 +16,7 @@ module.exports.createTaggersFiles = async function createTaggersFiles(
 module.exports.upsertFileUrl = async function upsertFileUrl(
   filesArr,
   manuscriptId,
+  userId,
 ) {
   const existingFiles = await FileModel.selectByManIdConvertedFiles(
     manuscriptId,
@@ -29,7 +30,8 @@ module.exports.upsertFileUrl = async function upsertFileUrl(
       file => file.type === fileTypesArr[i],
     )
     if (existingFile) {
-      const filedb = await FileModel.updateFileUrl(existingFile.id, newFile.url)
+      existingFile.url = newFile.url
+      const filedb = await FileModel.update(existingFile, userId)
       logger.info(filedb)
     } else {
       const filedb = await new FileModel(newFile).save({
@@ -43,12 +45,14 @@ module.exports.upsertFileUrl = async function upsertFileUrl(
 module.exports.upsertHtmlPrevFile = async function upsertHtmlPrevFile(
   newFile,
   manuscriptId,
+  userId,
 ) {
   const existingFiles = await FileModel.selectByManuscriptId(manuscriptId)
 
   const existingFile = existingFiles.find(file => file.type === 'source')
   if (existingFile) {
-    const filedb = await FileModel.updateFileUrl(existingFile.id, newFile.url)
+    existingFile.url = newFile.url
+    const filedb = await FileModel.update(existingFile, userId)
     logger.info(filedb)
   } else {
     const filedb = await new FileModel(newFile).save({

server/xml-validation/index.js

@@ -149,7 +149,7 @@ module.exports.pushXML = async function pushXML(fileUrl, manuscriptId, userId) {
             return obj
           })
 
-          await db.upsertFileUrl(dbFilesArr, manuscriptId)
+          await db.upsertFileUrl(dbFilesArr, manuscriptId, userId)
 
           Manuscript.update(
             { id: manuscriptId, pdfDepositState: 'WAITING_FOR_PDF_CONVERSION' },

server/xpub-model/entities/file/data-access.js

@@ -87,13 +87,6 @@ class File extends EpmcBaseModel {
     return rows.map(rowToEntity)
   }
 
-  static async updateFileUrl(id, fileurl) {
-    const fileUpdated = File.query()
-      .patch({ url: fileurl })
-      .where('id', id)
-    return fileUpdated
-  }
-
   static async selectAll() {
     const rows = await runQuery(
       buildQuery

server/xsweet-conversion/index.js

@@ -22,6 +22,7 @@ xsweetConvert(
 module.exports.xsweetConvert = async function xsweetConvert(
   fileUrl,
   manuscriptId,
+  userId,
 ) {
   const options = {
     method: 'POST',
@@ -62,7 +63,7 @@ module.exports.xsweetConvert = async function xsweetConvert(
         fileInfo.url = `/download/${uuid}${fileInfo.extension}`
         delete fileInfo.extension
 
-        await db.upsertHtmlPrevFile(fileInfo, manuscriptId)
+        await db.upsertHtmlPrevFile(fileInfo, manuscriptId, userId)
         logger.info('HTML converted file has been uploaded to Minio and to db')
       } catch (err) {
         throw err