#1215

app/components/operations.js

@@ -169,6 +169,7 @@ export const REJECT_MANUSCRIPT = gql`
         ...ManuscriptFragment
       }
       errors {
+        type
         message
       }
     }

app/components/review-wizard/operations.js

@@ -64,6 +64,7 @@ export const REVIEW_MANUSCRIPT = gql`
         ...ManuscriptFragment
       }
       errors {
+        type
         message
       }
     }

app/components/submission-wizard/CreateSetupPage.jsx

@@ -23,15 +23,18 @@ import { CREATE_MANUSCRIPT } from './operations'
 const SplitPageShort = styled(SplitPage)`
   min-height: calc(100vh - (${th('gridUnit')} * 20));
 `
+
+const freshState = {
+  error: null,
+  id: null,
+  showInfo: false,
+  checked: false,
+  cancelCheck: false,
+  inEPMC: false,
+}
+
 class CreateSetup extends React.Component {
-  state = {
-    message: null,
-    id: null,
-    showInfo: false,
-    checked: false,
-    cancelCheck: false,
-    inEPMC: false,
-  }
+  state = freshState
   manuscriptSetup = async (citationData, component) => {
     if (citationData) {
       const { createNote, createManuscript, history } = component.props
@@ -40,12 +43,15 @@ class CreateSetup extends React.Component {
         variables: { data: { ...citation } },
       })
       const { manuscript, errors } = created.data.createManuscript
-      const { id, version } = manuscript
-      const route = `/submission/${id}/create`
+      const { id, version } = manuscript || {}
+      const route = id ? `/submission/${id}/create` : '/create'
       if (errors && errors.length > 0) {
-        const { message } = errors[0]
-        component.setState({ message, id })
-        setTimeout(() => history.push(route), 3500)
+        const error = errors[0]
+        component.setState({ error, id })
+        setTimeout(() => {
+          history.push(route)
+          if (!id) component.setState(freshState)
+        }, (id && 3500) || 4000)
       } else {
         if (note) {
           await createNote({
@@ -63,7 +69,7 @@ class CreateSetup extends React.Component {
     }
   }
   render() {
-    const { showInfo, id, message, checked, cancelCheck, inEPMC } = this.state
+    const { showInfo, id, error, checked, cancelCheck, inEPMC } = this.state
     const { location, history } = this.props
     const enter = location.search.substr(1)
     const preprint = enter === 'preprint'
@@ -96,9 +102,10 @@ class CreateSetup extends React.Component {
           ) : (
             <div>
               <CreateHeader currentStep={0} preprint={preprint} />
-              {id && (
-                <Notification type="warning">
-                  {message} Redirecting to {id}.
+              {error && (
+                <Notification type={error.type}>
+                  {error.message}
+                  {id && ` Redirecting to ${id}.`}
                 </Notification>
               )}
               {!cancelCheck && <H2>Citation information</H2>}

app/components/submission-wizard/operations.js

@@ -31,6 +31,7 @@ export const CREATE_MANUSCRIPT = gql`
         }
       }
       errors {
+        type
         message
       }
     }
@@ -44,6 +45,7 @@ export const SUBMIT_MANUSCRIPT = gql`
         ...ManuscriptFragment
       }
       errors {
+        type
         message
       }
     }

server/xpub-model/entities/journal/index.js

 const lodash = require('lodash')
+const logger = require('@pubsweet/logger')
+const { PropManager } = require('../config')
 const Journal = require('./data-access')
 
 const empty = {
@@ -25,6 +27,26 @@ const JournalManager = {
   },
   selectWithNLM: async nlmId => Journal.selectByNlmId(nlmId),
   searchByTitle: async query => Journal.searchByTitle(query),
+  preprintCheck: async journalId => {
+    try {
+      const preprintServers = await PropManager.find('preprintServers')
+      const journal = await Journal.find(journalId)
+      const nlmta = journal['meta,nlmta']
+      const error = [
+        {
+          type: 'error',
+          message:
+            'Europe PMC plus does not accept preprint submissions. COVID-19 preprints are ingested directly from preprint servers.',
+        },
+      ]
+      return preprintServers.value.includes(nlmta) ? error : false
+    } catch {
+      logger.error(
+        'Preprint server list not set; cannot check submission journal status.',
+      )
+      return false
+    }
+  },
 }
 
 module.exports = JournalManager

server/xpub-model/seeds/config_seed.js

@@ -133,6 +133,23 @@ exports.seed = async (knex, Promise) => {
         stopDate: { date: '2021-01-03', time: '00:00:00' },
       }),
     },
+    {
+      name: 'preprintServers',
+      description:
+        'Preprint servers in the NLM Catalog, to refuse manuscript submissions',
+      schema: JSON.stringify({
+        type: 'array',
+        items: { type: 'string', description: 'Server name' },
+      }),
+      value: JSON.stringify([
+        'medRxiv',
+        'bioRxiv',
+        'Res Sq',
+        'SSRN',
+        'ArXiv',
+        'ChemRxiv',
+      ]),
+    },
     {
       name: 'approvedServers',
       description: 'List of preprint servers to skip submission QA',

server/xpub-server/entities/manuscript/resolvers.js

 const logger = require('@pubsweet/logger')
 const rfr = require('rfr')
 
-const { ManuscriptManager, OrganizationManager } = rfr('server/xpub-model')
+const { ManuscriptManager, OrganizationManager, JournalManager } = rfr(
+  'server/xpub-model',
+)
 const { addCitation } = rfr('server/xml-validation')
 const { deleteManifest } = rfr('server/ebi-integration/removeEbi')
 
@@ -122,6 +124,15 @@ const resolvers = {
       const organizationId = await OrganizationManager.getOrganizationID(
         data.preprint,
       )
+      if (!data.preprint && data.journalId) {
+        const preprintCheck = await JournalManager.preprintCheck(data.journalId)
+        if (preprintCheck) {
+          return {
+            manuscript: null,
+            errors: preprintCheck,
+          }
+        }
+      }
       delete data.preprint
       const dupeCheck = await ManuscriptManager.checkDuplicates(
         null,
@@ -142,6 +153,7 @@ const resolvers = {
             manuscript: dupeCheck.manuscripts[0],
             errors: [
               {
+                type: 'warning',
                 message:
                   'You already have a manuscript with this citation information.',
               },

server/xpub-server/entities/manuscript/typeDefs.graphqls

@@ -8,6 +8,7 @@ type Older {
 }
 
 type Error {
+  type: String
   message: String
 }