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Virify - MGnify protein MGYP assign step (CWL).

Virify - MGnify protein MGYP assign step (CWL).
feature/cwl-mgnify-proteindb-integration into dev
Open Martin Beracochea requested to merge feature/cwl-mgnify-proteindb-integration into dev

Optional step in the CWL version. We have included an additional input file with the assembly protein accessions (MGYPs). This fill will be used to replace the prodigal predicted proteins with the corresponding MGYP.

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  • Martin Beracochea
    Martin Beracochea @mbc ·
    Author Owner

    Created by: KeteSakharova

    Review: Approved

    Looks fine for me! I double checked that function that generates digest in pipeline-v5 corresponds to create_digest in viral pipeline. It is important because protein DB uses a bit another schema: it does digest for partial+seq, but pipeline-v5 only for seq.

  • Martin Beracochea
    Martin Beracochea @mbc ·
    Author Owner

    Created by: caballero

    Review: Approved

    code modifications are ok

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