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Virify - MGnify protein MGYP assign step (CWL).

Open Martin Beracochea requested to merge feature/cwl-mgnify-proteindb-integration into dev

Optional step in the CWL version. We have included an additional input file with the assembly protein accessions (MGYPs). This fill will be used to replace the prodigal predicted proteins with the corresponding MGYP.

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  • Created by: KeteSakharova

    Review: Approved

    Looks fine for me! I double checked that function that generates digest in pipeline-v5 corresponds to create_digest in viral pipeline. It is important because protein DB uses a bit another schema: it does digest for partial+seq, but pipeline-v5 only for seq.

  • Created by: caballero

    Review: Approved

    code modifications are ok

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