Remove FID replacement command, leave that to output (#20)

pyproject.toml

 [tool.poetry]
 name = "fraposa-pgsc"
-version = "1.0.1"
+version = "1.0.2"
 description = "Tools to perform ancestry projection to a reference dataset within the calculator pipeline (pgsc_calc)"
 homepage = "https://github.com/PGScatalog/fraposa_pgsc"
 authors = ["smlmbrt <sam.a.lambert@gmail.com>"]

src/fraposa_pgsc/fraposa_runner.py

@@ -40,10 +40,7 @@ def main():
             reader = csv.reader(f, delimiter="\t") # reads columns as str
             stu_filt_iid = []
             for x in reader:
-                if x[0] == "0":
-                    stu_filt_iid.append((x[1],x[1])) # replace missing FID with IID
-                else:
-                    stu_filt_iid.append((x[0], x[1])) # return FID, IID
+                stu_filt_iid.append((x[0], x[1])) # return FID, IID
             l_input = len(stu_filt_iid)
             stu_filt_iid = set(stu_filt_iid)
             if l_input != len(stu_filt_iid):