Commit d348a64e authored by Albert Vilella's avatar Albert Vilella
Browse files

adding maximise_concurrency and quick HIGHMEM option passing

parent c2e26c02
......@@ -50,6 +50,8 @@ GetOptions('help' => \$help,
'batchsize=i' => \$self->{'batch_size'},
'limit=i' => \$self->{'job_limit'},
'lifespan=i' => \$self->{'lifespan'},
'maximise_concurrency=i' => \$self->{'maximise_concurrency'},
'highmem=i' => \$self->{'highmem'},
'outdir=s' => \$self->{'outdir'},
'bk=s' => \$self->{'beekeeper'},
'pid=s' => \$self->{'process_id'},
......@@ -102,6 +104,8 @@ unless($DBA and $DBA->isa("Bio::EnsEMBL::Hive::DBSQL::DBAdaptor")) {
}
my $queen = $DBA->get_Queen();
$queen->{maximise_concurrency} = 1 if ($self->{maximise_concurrency});
$queen->{highmem} = $self->{highmem} if ($self->{highmem});
################################
# LSF submit system dependency
......@@ -130,7 +134,6 @@ if($self->{'logic_name'}) {
}
$self->{'analysis_id'} = $analysis->dbID;
}
if($self->{'analysis_id'} and $self->{'input_id'}) {
$self->{'analysis_job'} = new Bio::EnsEMBL::Hive::AnalysisJob;
$self->{'analysis_job'}->input_id($self->{'input_id'});
......@@ -161,6 +164,7 @@ unless($worker) {
exit(0);
}
$worker->{HIGHMEM} = $self->{highmem} if($self->{highmem});
$worker->debug($self->{'debug'}) if($self->{'debug'});
if(defined($self->{'outdir'})) { $worker->output_dir($self->{'outdir'}); }
......
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