Commits · 8ff11761bf6333eaed2a9f95b0ecefd41debdf6a · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 14 minutes ago.

Nov 29, 2011
- removed 'sema_fan_branch_code' parameter since you can now set up a semaphored... · 8ff11761
  Leo Gordon authored 13 years ago
```
removed 'sema_fan_branch_code' parameter since you can now set up a semaphored group via PipeConfig' language
```
  8ff11761
Nov 28, 2011
- no need to check for semaphores when state is already DONE or PASSED_ON · 48b5f0e2
  Leo Gordon authored 13 years ago
  
  48b5f0e2
- making sure semaphores are correctly propagated through gc_dataflow and PASSED_ON state · 61be99bb
  Leo Gordon authored 13 years ago
  
  61be99bb
Nov 25, 2011
- allow more than one input_id_template per analysis · a7e0f2de
  Leo Gordon authored 13 years ago
  
  a7e0f2de
Nov 24, 2011
- bugfix: funnel_branch is no longer initialized to 1 when undef · 7561f9a8
  Leo Gordon authored 13 years ago
  
  7561f9a8
- bugfix: correct counting of total_job_number in non-trigger mode · 40eab739
  Leo Gordon authored 13 years ago
  
  40eab739
- bugfix - branch_name_2_code should return 1 on undef · 373b7d73
  Leo Gordon authored 13 years ago
  
  373b7d73
Nov 23, 2011
- show the dataflow-generated semaphores on the diagram · b0c31a30
  Leo Gordon authored 13 years ago
  
  b0c31a30
- bugfix: object adaptor now correctly reconstructs dbID · 26d2e706
  Leo Gordon authored 13 years ago
  
  26d2e706
- merge the two ways of running the LongMult pipeline into one · c2eb1bf5
  Leo Gordon authored 13 years ago
  
  c2eb1bf5
- integrated semaphored fans/funnels into dataflow rules · 486e481c
  Leo Gordon authored 13 years ago
  
  486e481c
Nov 22, 2011
- this value was returned but never used · 19897cc0
  Leo Gordon authored 13 years ago
  
  19897cc0
Nov 21, 2011
- remove the per-worker batch_size method · d67bcffb
  Leo Gordon authored 13 years ago
  
  d67bcffb
- remove the per-worker batch_size flag from scripts · 1ca856a8
  Leo Gordon authored 13 years ago
  
  1ca856a8
Nov 17, 2011
- make num_running_workers updatable by triggers + better updates during worker check-in · 76b1900d
  Leo Gordon authored 13 years ago
  
  76b1900d
Nov 10, 2011
- these four methods were neither used by Hive nor by Compara code · 2d5ff61c
  Leo Gordon authored 13 years ago
  
  2d5ff61c
Nov 04, 2011
- DBI with versions older than 1.6 are not supported · e02eef61
  Leo Gordon authored 13 years ago
  
  e02eef61
Oct 15, 2011
- release 65 · 4d42dc24
  Leo Gordon authored 13 years ago
  
  4d42dc24
Sep 23, 2011
- An example pipeline that turns lines of a file into jobs and runs them on the farm · b1fa8999
  Leo Gordon authored 13 years ago
  
  b1fa8999
Sep 20, 2011
- extend for other schema types · 7059196a
  Leo Gordon authored 13 years ago
  
  7059196a
Sep 09, 2011
- analysis_data may be overcrowded with inserts during dataflow with input_id... · e2a13003
  Leo Gordon authored 13 years ago
```
analysis_data may be overcrowded with inserts during dataflow with input_id longer than 255 characters
```
  e2a13003
Sep 05, 2011
- couple of typos · c3437cc3
  Leo Gordon authored 13 years ago
  
  c3437cc3
- checkout seems to work better than export · 8af7ba43
  Leo Gordon authored 13 years ago
  
  8af7ba43
Sep 01, 2011

Incorporate ENV hash into the tree of possible options in order to be able to... · e4a70d7e

Leo Gordon authored 13 years ago

Incorporate ENV hash into the tree of possible options in order to be able to "require" a value. And a bit of config inheritance cleanup.

e4a70d7e

Aug 25, 2011
- Switching from DBI to DBConnection; data_dbc() as the main focus point;... · f48fbeb0
  Leo Gordon authored 13 years ago
```
Switching from DBI to DBConnection; data_dbc() as the main focus point; standaloneJob.pl examples of basic building blocks
```
  f48fbeb0
Aug 18, 2011
- show query/cmd/filename when debug is on · 41f97b37
  Leo Gordon authored 13 years ago
  
  41f97b37
- sqlite databases do not have a host name, so nothing to display here · a1a53d6d
  Leo Gordon authored 13 years ago
  
  a1a53d6d
Aug 15, 2011
- the schema did not allow more than one job_message per second from one... · 6c89bc44
  Leo Gordon authored 13 years ago
```
the schema did not allow more than one job_message per second from one attempt. This limitation has been removed
```
  6c89bc44
Jul 26, 2011
- allow standalone jobs to emit warnings · 00a2bbd1
  Leo Gordon authored 13 years ago
  
  00a2bbd1
- for the production of rel.64 · 4d4a95f1
  Leo Gordon authored 13 years ago
  
  4d4a95f1
Jul 20, 2011
- bugfix: more foolproof maths in triggers · a9f1e64d
  Leo Gordon authored 13 years ago
  
  a9f1e64d
Jul 15, 2011
- moved Worker's call to Queen->safe_synchronize_AnalysisStats into Worker.pm for clarity · df9ca5a9
  Leo Gordon authored 13 years ago
  
  df9ca5a9
- now it should properly refresh data in the existing object · 4b517d33
  Leo Gordon authored 13 years ago
  
  4b517d33
- do not update counters unnecessarily · 7ab2d639
  Leo Gordon authored 13 years ago
  
  7ab2d639
- formatting and cleanup · 942f9a29
  Leo Gordon authored 13 years ago
  
  942f9a29
- more flexible approach: allows to add triggers later by simply by sourcing the triggers file · 41953ab2
  Leo Gordon authored 13 years ago
  
  41953ab2
- perform worker counting centrally in the Queen · c95e0fa9
  Leo Gordon authored 13 years ago
  
  c95e0fa9
- do not update these fields when triggers in place · 31d8df4e
  Leo Gordon authored 13 years ago
  
  31d8df4e
Jul 14, 2011
- added a new beekeeper_extra_cmdline_options() interface method for passing... · 4ea4ba80
  Leo Gordon authored 13 years ago
```
added a new beekeeper_extra_cmdline_options() interface method for passing cmdline options to beekeeper.pl/runWorker.pl
```
  4ea4ba80
- optional (cmdline-controlled, off-by-default) support of job-counting triggers · efb2f8b3
  Leo Gordon authored 13 years ago
  
  efb2f8b3