Commits · b1fa8999fc8fe1193d55de369c31233c74273024 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 29 minutes ago.

Sep 23, 2011
- An example pipeline that turns lines of a file into jobs and runs them on the farm · b1fa8999
  Leo Gordon authored 13 years ago
  
  b1fa8999
Sep 20, 2011
- extend for other schema types · 7059196a
  Leo Gordon authored 13 years ago
  
  7059196a
Sep 09, 2011
- analysis_data may be overcrowded with inserts during dataflow with input_id... · e2a13003
  Leo Gordon authored 13 years ago
```
analysis_data may be overcrowded with inserts during dataflow with input_id longer than 255 characters
```
  e2a13003
Sep 05, 2011
- couple of typos · c3437cc3
  Leo Gordon authored 13 years ago
  
  c3437cc3
- checkout seems to work better than export · 8af7ba43
  Leo Gordon authored 13 years ago
  
  8af7ba43
Sep 01, 2011

Incorporate ENV hash into the tree of possible options in order to be able to... · e4a70d7e

Leo Gordon authored 13 years ago

Incorporate ENV hash into the tree of possible options in order to be able to "require" a value. And a bit of config inheritance cleanup.

e4a70d7e

Aug 25, 2011
- Switching from DBI to DBConnection; data_dbc() as the main focus point;... · f48fbeb0
  Leo Gordon authored 13 years ago
```
Switching from DBI to DBConnection; data_dbc() as the main focus point; standaloneJob.pl examples of basic building blocks
```
  f48fbeb0
Aug 18, 2011
- show query/cmd/filename when debug is on · 41f97b37
  Leo Gordon authored 13 years ago
  
  41f97b37
- sqlite databases do not have a host name, so nothing to display here · a1a53d6d
  Leo Gordon authored 13 years ago
  
  a1a53d6d
Aug 15, 2011
- the schema did not allow more than one job_message per second from one... · 6c89bc44
  Leo Gordon authored 13 years ago
```
the schema did not allow more than one job_message per second from one attempt. This limitation has been removed
```
  6c89bc44
Jul 26, 2011
- allow standalone jobs to emit warnings · 00a2bbd1
  Leo Gordon authored 13 years ago
  
  00a2bbd1
- for the production of rel.64 · 4d4a95f1
  Leo Gordon authored 13 years ago
  
  4d4a95f1
Jul 20, 2011
- bugfix: more foolproof maths in triggers · a9f1e64d
  Leo Gordon authored 13 years ago
  
  a9f1e64d
Jul 15, 2011
- moved Worker's call to Queen->safe_synchronize_AnalysisStats into Worker.pm for clarity · df9ca5a9
  Leo Gordon authored 13 years ago
  
  df9ca5a9
- now it should properly refresh data in the existing object · 4b517d33
  Leo Gordon authored 13 years ago
  
  4b517d33
- do not update counters unnecessarily · 7ab2d639
  Leo Gordon authored 13 years ago
  
  7ab2d639
- formatting and cleanup · 942f9a29
  Leo Gordon authored 13 years ago
  
  942f9a29
- more flexible approach: allows to add triggers later by simply by sourcing the triggers file · 41953ab2
  Leo Gordon authored 13 years ago
  
  41953ab2
- perform worker counting centrally in the Queen · c95e0fa9
  Leo Gordon authored 13 years ago
  
  c95e0fa9
- do not update these fields when triggers in place · 31d8df4e
  Leo Gordon authored 13 years ago
  
  31d8df4e
Jul 14, 2011
- added a new beekeeper_extra_cmdline_options() interface method for passing... · 4ea4ba80
  Leo Gordon authored 13 years ago
```
added a new beekeeper_extra_cmdline_options() interface method for passing cmdline options to beekeeper.pl/runWorker.pl
```
  4ea4ba80
- optional (cmdline-controlled, off-by-default) support of job-counting triggers · efb2f8b3
  Leo Gordon authored 13 years ago
  
  efb2f8b3
- renamed procedures.sql and foreign_keys.sql into .mysql equivalents · d4d8b410
  Leo Gordon authored 13 years ago
  
  d4d8b410
- experimental: do the job counting immediately by SQL triggers rather than periodically by Perl code · 72a90997
  Leo Gordon authored 13 years ago
  
  72a90997
Jul 13, 2011
- allow automatic dataflow into tables as well · 0f477f14
  Leo Gordon authored 13 years ago
  
  0f477f14
- do not perform interval_update if no new jobs were done (to avoid division by zero) · a7088961
  Leo Gordon authored 13 years ago
  
  lg4_post_rel63_20110712
  
  a7088961
- no need for the variable · 72a2f04b
  Leo Gordon authored 13 years ago
  
  72a2f04b
- do not perform interval_update if no new jobs were done (to avoid division by zero) · aa0a287a
  Leo Gordon authored 13 years ago
  
  aa0a287a
Jul 12, 2011
- one last thing: Process.pm : do not complain on STDERR that honeycomb_dir is... · c39d4e24
  Leo Gordon authored 13 years ago
```
one last thing: Process.pm : do not complain on STDERR that honeycomb_dir is not defined, just return immediately
```
  c39d4e24
Jul 08, 2011
- return immediately if honeycomb_dir not defined · d6237f49
  Leo Gordon authored 13 years ago
  
  d6237f49
- updates for the next "stable" "release" · 54c1585a
  Leo Gordon authored 13 years ago
  
  54c1585a
Jul 06, 2011
- added an automatic dataflow example · fca69ba8
  Leo Gordon authored 13 years ago
  
  fca69ba8
- adding automatic dataflow to branch 1 · 3636e9db
  Leo Gordon authored 13 years ago
  
  3636e9db
- no point in disconnecting here · c84acd27
  Leo Gordon authored 13 years ago
  
  c84acd27
- allow creation of jobs in a hive_db from a DB-less job · 844f7106
  Leo Gordon authored 13 years ago
  
  844f7106
Jul 05, 2011
- added a compara_db example · 7819d7e3
  Leo Gordon authored 13 years ago
  
  7819d7e3
- formatting · d32bf180
  Leo Gordon authored 13 years ago
  
  d32bf180
- allow dataflow from standaloneJob · a5a2b843
  Leo Gordon authored 13 years ago
  
  a5a2b843
- fixed a bug that prevented parsing of lists; also allow destringification of values from cmdline · 5778d580
  Leo Gordon authored 13 years ago
  
  5778d580
Jul 04, 2011
- make sure we support PASSED_ON status for jobs that undergo GarbageCollection · a76403b6
  Leo Gordon authored 13 years ago
  
  a76403b6