Commits · ccaab585b5d6b7fa56489d8fdc5f279d50674633 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 9 minutes ago.

Jun 10, 2010
- Bugfix. It wasnt possible to pass hive_output_dir as pipeline_wide_parameter. Now it should be. · ccaab585
  Leo Gordon authored 14 years ago
  
  ccaab585
Jun 03, 2010
- changes made during the last couple of weeks · 5fc21dbb
  Leo Gordon authored 14 years ago
  
  lg4_post_rel58_20100603
  
  5fc21dbb
- JobFactory can now generate input_ids from multi-column input; splitting on... · 7522db1d
  Leo Gordon authored 14 years ago
```
JobFactory can now generate input_ids from multi-column input; splitting on param("delimiter") has not been tested though
```
  7522db1d
- make templates readable in the output · 9bf23952
  Leo Gordon authored 14 years ago
  
  9bf23952
May 26, 2010
- make these parameters optional · 9317345b
  Leo Gordon authored 14 years ago
  
  9317345b
May 20, 2010
- relaxing the constraint to allow multiple templates per branch · c1d2e495
  Leo Gordon authored 14 years ago
  
  c1d2e495
May 18, 2010
- an important bug fix · 7e457ff7
  Leo Gordon authored 14 years ago
  
  7e457ff7
May 17, 2010
- init_pipeline.pl should now be used · dda0891c
  Leo Gordon authored 14 years ago
  
  dda0891c
May 14, 2010
- bringing docs up-to-date with new init_pipeline · 6efd59d5
  Leo Gordon authored 14 years ago
  
  6efd59d5
- new style LongMult pipeline config and running added · 11863831
  Leo Gordon authored 14 years ago
  
  11863831
May 13, 2010
- pod formatting mainly · 8cfb6bfd
  Leo Gordon authored 14 years ago
  
  8cfb6bfd
- show mysql command line · 28781ea0
  Leo Gordon authored 14 years ago
  
  28781ea0
May 12, 2010
- analysis_topup and job_topup modes supported · ce6571c3
  Leo Gordon authored 14 years ago
  
  ce6571c3
- formatting · 7eeef124
  Leo Gordon authored 14 years ago
  
  7eeef124
- pod documentation formatting · 2800d0a7
  Leo Gordon authored 14 years ago
  
  2800d0a7
- proper loading of modules by their filename and proper docs · 5fb9466f
  Leo Gordon authored 14 years ago
  
  5fb9466f
May 11, 2010
- latest changes · 91d9530d
  Leo Gordon authored 14 years ago
  
  lg4_post_rel58_20100511
  
  91d9530d
- added support for input_id_template in dataflow_rule · db651912
  Leo Gordon authored 14 years ago
  
  db651912
- another documentation day · 728f039b
  Leo Gordon authored 14 years ago
  
  728f039b
May 10, 2010
- recursive param_substitute now takes care of substituting... · 7673dbd2
  Leo Gordon authored 14 years ago
```
recursive param_substitute now takes care of substituting _range_start/_range_end/_range_count in JobFactory; change of syntax
```
  7673dbd2
- another example: potential for a double fan using JobFactory · 05ccdd6d
  Leo Gordon authored 14 years ago
  
  05ccdd6d
May 07, 2010
- now with param_substitute in all four sources · 9180c90b
  Leo Gordon authored 14 years ago
  
  9180c90b
- typo · 6ff3a8b5
  Leo Gordon authored 14 years ago
  
  6ff3a8b5
- this value is never used · caa2f220
  Leo Gordon authored 14 years ago
  
  caa2f220
- does not seem to need it · 2c139b53
  Leo Gordon authored 14 years ago
  
  2c139b53
- perldocs added · 38085193
  Leo Gordon authored 14 years ago
  
  38085193
- does not seem to need it · d5e785e4
  Leo Gordon authored 14 years ago
  
  d5e785e4
- re-written to support ProcessWithParams and with perldoc added · f999c342
  Leo Gordon authored 14 years ago
  
  f999c342
May 06, 2010
- documentation day! · 3e582015
  Leo Gordon authored 14 years ago
  
  3e582015
- pod documentation added · 3d8a76e0
  Leo Gordon authored 14 years ago
  
  3d8a76e0
- better names · 8beb4d5a
  Leo Gordon authored 14 years ago
  
  8beb4d5a
- start documenting things in pod · b346e9c2
  Leo Gordon authored 14 years ago
  
  b346e9c2
- this method is dataflow-able now, to make it possible to extend the pipeline · 7ffc4831
  Leo Gordon authored 14 years ago
  
  7ffc4831
May 05, 2010
- simple building_block-only pipeline solutions · 373dc1b4
  Leo Gordon authored 14 years ago
  
  373dc1b4
- inputcmd mode added · 911193c3
  Leo Gordon authored 14 years ago
  
  911193c3
- adding parameters to make it ncRNA-pipeline ready · aab40464
  Leo Gordon authored 14 years ago
  
  aab40464
May 04, 2010
- bug fix · 5e7221af
  Leo Gordon authored 14 years ago
  
  5e7221af
- JobFactory is now able to run queries against external databases · e2ca5803
  Leo Gordon authored 14 years ago
  
  e2ca5803
- more parameters and comments · 8e12ee7e
  Leo Gordon authored 14 years ago
  
  8e12ee7e
May 03, 2010
- screen messages · 0f1d3c50
  Leo Gordon authored 14 years ago
  
  0f1d3c50