This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git.
Pull mirroring updated .
- Dec 22, 2014
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Matthieu Muffato authored
* version/2.0: Backported the recent changes from Ensembl's DBConnection
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Matthieu Muffato authored
- use placeholders in "do" commands
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- Nov 05, 2014
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
bugfix [to ee51e74e] : restore the password-hiding functionality between beekeeper.pl and runWorker.pl
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- Oct 29, 2014
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Matthieu Muffato authored
* version/2.0: The main index is docs/index.html
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Matthieu Muffato authored
* version/1.9: The main index is docs/index.html
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Matthieu Muffato authored
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- Oct 27, 2014
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Matthieu Muffato authored
- always write the sequence to the current seqio - fix for creating lots of empty output files - fix warning "Use of uninitialized value in subroutine entry"
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Matthieu Muffato authored
- always write the sequence to the current seqio - fix for creating lots of empty output files - fix warning "Use of uninitialized value in subroutine entry"
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Matthieu Muffato authored
PR #5
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Roy Storey authored
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Roy Storey authored
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Roy Storey authored
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- Oct 25, 2014
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Matthieu Muffato authored
(and probably RUNLIMIT as well) The problem was in Queen::register_worker_death(). The code fetches the current role, finalizes it, and then updates the worker table. The role that is fetched from the database with fetch_last_unfinished_by_worker_id() is not connected to any workers and later, when AnalysisJobAdaptor::release_undone_jobs_from_role() needs to know the cause of death and the number of work done by the worker, the role would load another instance of the worker using the information currently stored in the database, that is: before it has been updated. Hence, the code was complaining that cause_of_death was not populated. By associating the role to the worker, we allow the method to read the existing information
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Matthieu Muffato authored
This is done by setting "self_burial" to 0
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- Oct 21, 2014
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Leo Gordon authored
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- Oct 16, 2014
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Leo Gordon authored
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Leo Gordon authored
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Leo Gordon authored
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- Oct 07, 2014
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Leo Gordon authored
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- Sep 30, 2014
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Leo Gordon authored
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- Sep 26, 2014
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Leo Gordon authored
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- Sep 18, 2014
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Leo Gordon authored
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- Sep 08, 2014
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Leo Gordon authored
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- Sep 04, 2014
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Leo Gordon authored
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Leo Gordon authored
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- Sep 02, 2014
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Matthieu Muffato authored
* version/2.0: Added a link to the schema diagram in PNG Conflicts: docs/hive_schema.inc
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Matthieu Muffato authored
* version/1.9: Added a link to the schema diagram in PNG
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Matthieu Muffato authored
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Matthieu Muffato authored
* version/2.0: Added an HTML index for the workshop
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Matthieu Muffato authored
* version/1.9: Added an HTML index for the workshop
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Matthieu Muffato authored
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- Sep 01, 2014
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
* version/2.0: Updated the installation guide for 2.0 Updated the Doxygen doc for 2.0 Added the Doxygen documentation Added scripts documentation Added docs/index.html and use rawgit in README.md typo Include the CSS for the eHive HTML doc Doc update to please Doxygen bugfix: in each branch README.md will have to refer to its own version of docs adding reformatted install.html and README.md links to HTML documents (relying on htmlpreview functionality) Conflicts: docs/hive_schema.html
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Matthieu Muffato authored
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Matthieu Muffato authored
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Matthieu Muffato authored
* version/1.9: Added the Doxygen documentation Added scripts documentation Added docs/index.html and use rawgit in README.md typo Include the CSS for the eHive HTML doc Doc update to please Doxygen bugfix: in each branch README.md will have to refer to its own version of docs adding reformatted install.html and README.md links to HTML documents (relying on htmlpreview functionality)
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