Commits · efb2f8b3d437225af98e2ffdbdafc6a57a0a4721 · ensembl-gh-mirror / ensembl-hive

This project is mirrored from https://:*****@github.com/Ensembl/ensembl-hive.git. Pull mirroring updated 29 minutes ago.

Jul 14, 2011
- optional (cmdline-controlled, off-by-default) support of job-counting triggers · efb2f8b3
  Leo Gordon authored 13 years ago
  
  efb2f8b3
- renamed procedures.sql and foreign_keys.sql into .mysql equivalents · d4d8b410
  Leo Gordon authored 13 years ago
  
  d4d8b410
- experimental: do the job counting immediately by SQL triggers rather than periodically by Perl code · 72a90997
  Leo Gordon authored 13 years ago
  
  72a90997
Jul 13, 2011
- allow automatic dataflow into tables as well · 0f477f14
  Leo Gordon authored 13 years ago
  
  0f477f14
- do not perform interval_update if no new jobs were done (to avoid division by zero) · a7088961
  Leo Gordon authored 13 years ago
  
  lg4_post_rel63_20110712
  
  a7088961
- no need for the variable · 72a2f04b
  Leo Gordon authored 13 years ago
  
  72a2f04b
- do not perform interval_update if no new jobs were done (to avoid division by zero) · aa0a287a
  Leo Gordon authored 13 years ago
  
  aa0a287a
Jul 12, 2011
- one last thing: Process.pm : do not complain on STDERR that honeycomb_dir is... · c39d4e24
  Leo Gordon authored 13 years ago
```
one last thing: Process.pm : do not complain on STDERR that honeycomb_dir is not defined, just return immediately
```
  c39d4e24
Jul 08, 2011
- return immediately if honeycomb_dir not defined · d6237f49
  Leo Gordon authored 13 years ago
  
  d6237f49
- updates for the next "stable" "release" · 54c1585a
  Leo Gordon authored 13 years ago
  
  54c1585a
Jul 06, 2011
- added an automatic dataflow example · fca69ba8
  Leo Gordon authored 13 years ago
  
  fca69ba8
- adding automatic dataflow to branch 1 · 3636e9db
  Leo Gordon authored 13 years ago
  
  3636e9db
- no point in disconnecting here · c84acd27
  Leo Gordon authored 13 years ago
  
  c84acd27
- allow creation of jobs in a hive_db from a DB-less job · 844f7106
  Leo Gordon authored 13 years ago
  
  844f7106
Jul 05, 2011
- added a compara_db example · 7819d7e3
  Leo Gordon authored 13 years ago
  
  7819d7e3
- formatting · d32bf180
  Leo Gordon authored 13 years ago
  
  d32bf180
- allow dataflow from standaloneJob · a5a2b843
  Leo Gordon authored 13 years ago
  
  a5a2b843
- fixed a bug that prevented parsing of lists; also allow destringification of values from cmdline · 5778d580
  Leo Gordon authored 13 years ago
  
  5778d580
Jul 04, 2011
- make sure we support PASSED_ON status for jobs that undergo GarbageCollection · a76403b6
  Leo Gordon authored 13 years ago
  
  a76403b6
- be numerically strict with the value stored in boolean field · f86ac931
  Leo Gordon authored 13 years ago
  
  f86ac931
Jul 02, 2011

rationalized dynamic batch_size estimation: it is now done centrally both for... · 1c3d8c6b

Leo Gordon authored 13 years ago

rationalized dynamic batch_size estimation: it is now done centrally both for single Workers (claiming) and the Queen (sync procedure)

1c3d8c6b

Jul 01, 2011
- show count to be 0 for analyses which have no jobs · 404e8a07
  Leo Gordon authored 13 years ago
  
  404e8a07
Jun 30, 2011

Old implementation of store_out_files() was generating incompatible SQL for... · f7523be1

Andy Yates authored 13 years ago

Old implementation of store_out_files() was generating incompatible SQL for SQLite. Prepared statement version developed & have removed the IGNORE component due to the delete which occurs as the first task in the method.

f7523be1

Jun 29, 2011
- rationalized reg_conf/reg_alias names and fixed the way they are passed into... · 76a6e820
  Leo Gordon authored 13 years ago
```
rationalized reg_conf/reg_alias names and fixed the way they are passed into runWorker and used in it
```
  76a6e820
Jun 16, 2011
- POD fixes for Doxygen compatibility · 1678fc1f
  Kieron Taylor authored 13 years ago
  
  1678fc1f
Jun 15, 2011
- sqlite has views but not procedures · 64553882
  Leo Gordon authored 13 years ago
  
  64553882
- not enough attempts, obviously · 85cc4260
  Leo Gordon authored 13 years ago
  
  85cc4260
- Hive::RunnableDB::JobFactory interface change. You may need to review your PipeConfig modules · 3230de85
  Leo Gordon authored 13 years ago
  
  3230de85
Jun 14, 2011
- bugfix: do not force whole-piece substitutions into string context · 5545b6fa
  Leo Gordon authored 13 years ago
  
  5545b6fa
- make dir_revhash available to param substitution · 68498508
  Leo Gordon authored 13 years ago
  
  68498508
Jun 07, 2011
- only finish if sth was defined · dbdb5695
  Leo Gordon authored 13 years ago
  
  dbdb5695
Jun 03, 2011
- show all analyses, including empty ones · 2e2f29e5
  Leo Gordon authored 13 years ago
  
  2e2f29e5
Jun 02, 2011
- check for multiple analysis sections with the same name · 3cc577ed
  Leo Gordon authored 13 years ago
  
  3cc577ed
May 31, 2011
- :) · 881c165c
  Leo Gordon authored 13 years ago
  
  881c165c
May 28, 2011
- allow jobs' dataflow rules to be overridden · f3131673
  Leo Gordon authored 13 years ago
  
  f3131673
May 27, 2011
- dbh(): centrally managed db_handle for universal building blocks · 0b44297b
  Leo Gordon authored 13 years ago
  
  0b44297b
- just spacing · 269dce3f
  Leo Gordon authored 13 years ago
  
  269dce3f
May 26, 2011
- new script for running standalone jobs · 2b994c7b
  Leo Gordon authored 13 years ago
  
  2b994c7b
- some common subroutines moving out · bccf3990
  Leo Gordon authored 13 years ago
  
  bccf3990
- not really needed · cdf5dc5e
  Leo Gordon authored 13 years ago
  
  cdf5dc5e