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Magali Ruffier authored29a95b3b
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external_db.txt 45.10 KiB
210 Anopheles_symbol \N KNOWN 50 Anopheles symbol MISC \N \N \N
211 VB_Community_Symbol \N KNOWN 50 VB Community Symbol MISC \N \N \N
212 VB_External_Description 1 PRED 50 VB External Description MISC \N \N \N
213 VB_RNA_Description 1 PRED 50 VB RNA Description MISC \N \N \N
230 Ribosomal_Protein_Gene_Database Dec.2010 XREF 50 Ribosomal Protein Gene DB MISC \N \N \N
250 ImmunoDB 1 KNOWN 50 ImmunoDB MISC \N \N \N
300 BRIGGSAE_HYBRID \N KNOWNXREF 5 Briggsae Hybrid MISC \N \N \N
400 Celera_Gene \N PRED 5 Celera gene MISC \N \N \N
410 Celera_Pep \N PRED 5 Celera peptide MISC \N \N \N
420 Celera_Trans \N PRED 5 Celera transcript MISC \N \N \N
600 DROS_ORTH \N ORTH 5 DROS ORTH MISC \N \N \N
700 EMBL \N KNOWNXREF 5 European Nucleotide Archive MISC \N \N \N
701 EMBL_predicted \N PRED 119 Predicted European Nucleotide Archive MISC \N \N \N
800 flybase_gene_id \N KNOWNXREF 5 Flybase Gene MISC \N \N \N
801 flybase_translation_id \N KNOWNXREF 5 Flybase translation ID MISC \N \N \N
802 flybase_gff \N KNOWNXREF 5 Flybase GFF MISC \N \N \N
803 flybase_polypeptide_id \N KNOWNXREF 5 Flybase Polypeptide ID MISC \N \N \N
804 flybase_annotation_id \N KNOWNXREF 5 Flybase Annotation ID MISC \N \N \N
805 flybase_symbol \N KNOWNXREF 50 Flybase Symbol MISC \N \N \N
806 flybase_synonym \N KNOWNXREF 5 Flybase Synonym MISC \N \N \N
807 flybase_name \N KNOWNXREF 5 Flybase Name MISC \N \N \N
808 flybase_transcript_id \N KNOWNXREF 299 Flybase transcript ID MISC \N \N \N
810 gadfly_gene_cgid \N XREF 10 Gadfly gene CGID MISC \N \N \N
811 gadfly_transcript_cgid \N XREF 10 Gadfly transcript CGID MISC \N \N \N
812 gadfly_translation_cgid \N XREF 10 Gadfly translation CGID MISC \N \N \N
821 FlyBaseName_gene \N KNOWN 5 FlyBase gene name MISC \N \N \N
824 FlyBaseName_translation \N KNOWN 5 FlyBase translation name MISC \N \N \N
825 FlyBaseName_transcript \N XREF 50 FlyBase transcript name MISC \N \N \N
826 FlyBaseCGID_gene \N XREF 5 FlyBase gene CGID MISC \N \N \N
827 FlyBaseCGID_transcript \N XREF 50 FlyBase transcript CGID MISC \N \N \N
828 FlyBaseCGID_translation \N XREF 50 FlyBase translation CGID MISC \N \N \N
829 BioGRID \N KNOWNXREF 5 BioGRID Interaction data, The General Repository for Interaction Datasets MISC \N \N \N
830 FlyExpress \N KNOWNXREF 5 FlyExpress, expression patterns of developmentally relevant genes in Drosophila embryogenesis MISC \N \N \N
831 GenomeRNAi \N KNOWNXREF 5 GenomeRNAi, a database for cell-based RNAi phenotypes MISC \N \N \N
832 InteractiveFly \N KNOWNXREF 5 The Interactive Fly MISC \N \N \N
833 MitoDrome \N KNOWNXREF 5 Nuclear genes encoding proteins targeted to the mitochondrion MISC \N \N \N
880 BDGP_insitu_expr \N KNOWNXREF 5 Berkeley Drosophila Genome Project in situ Gene Expression Database (embryogenesis) MISC \N \N \N
882 FlyGrid \N KNOWNXREF 5 FlyGRID Interaction Data, The General Repository for Interaction Datasets MISC \N \N \N
883 FlyReactome \N KNOWNXREF 5 FlyReactome, a Curated Knowledgebase of Drosophila Melanogaster Pathways MISC \N \N \N
890 DEDb \N KNOWNXREF 5 Drosophila melanogaster Exon Database MISC \N \N \N
900 GKB \N XREF 5 GKB MISC \N \N \N
1000 GO GOA Human (version 123), released on 26 June, 2013 and assembled using the publicly released data available in the source databases on 22 June, 2013. XREF 5 GO MISC \N \N \N
1001 GO_REF \N KNOWN 5 GO Reference Collection LIT \N \N \N
1100 HGNC \N KNOWNXREF 100 HGNC Symbol PRIMARY_DB_SYNONYM \N \N \N
1200 Interpro \N XREF 5 InterPro MISC \N \N \N
1300 EntrezGene \N KNOWNXREF 250 EntrezGene MISC \N \N \N
1400 MGI \N KNOWNXREF 270 MGI Symbol MISC \N \N \N
1500 MIM \N KNOWNXREF 5 MIM MISC \N \N \N
1510 MIM_GENE \N KNOWNXREF 5 MIM gene MISC \N \N \N
1520 MIM_MORBID \N KNOWNXREF 150 MIM disease MISC \N \N \N
1600 PDB \N KNOWNXREF 5 PDB MISC \N \N \N
1700 protein_id \N KNOWNXREF 5 INSDC protein ID MISC \N \N \N
1701 protein_id_predicted \N PRED 4 Predicted INSDC Protein ID MISC \N \N \N
1800 RefSeq_dna \N KNOWN 200 RefSeq DNA MISC \N \N \N
1801 RefSeq_mRNA NCBI Reference Sequence (RefSeq) Database Release 60, July 19, 2013 KNOWN 200 RefSeq mRNA MISC \N \N \N
1803 RefSeq_ncRNA NCBI Reference Sequence (RefSeq) Database Release 58, March 11, 2013 KNOWN 200 RefSeq ncRNA MISC \N \N \N
1805 RefSeq_dna_predicted \N PRED 199 RefSeq DNA predicted MISC \N \N \N
1806 RefSeq_mRNA_predicted NCBI Reference Sequence (RefSeq) Database Release 58, March 11, 2013 PRED 199 RefSeq mRNA predicted MISC \N \N \N
1808 RefSeq_ncRNA_predicted NCBI Reference Sequence (RefSeq) Database Release 58, March 11, 2013 PRED 199 RefSeq ncRNA predicted MISC \N \N \N
1810 RefSeq_peptide NCBI Reference Sequence (RefSeq) Database Release 60, July 19, 2013 KNOWN 210 RefSeq peptide MISC \N \N \N
1815 RefSeq_peptide_predicted NCBI Reference Sequence (RefSeq) Database Release 58, March 11, 2013 PRED 197 RefSeq peptide predicted MISC \N \N \N
1820 RefSeq_rna \N KNOWN 230 RefSeq RNA MISC \N \N \N
1825 RefSeq_rna_predicted \N PRED 195 RefSeq RNA predicted MISC \N \N \N
1830 RefSeq_genomic \N KNOWN 193 RefSeq Genomic MISC \N \N \N
1900 Sanger_Hver1_2_1 \N XREF 5 Sanger Hver 121 MISC \N \N \N
1901 Sanger_Hver1_3_1 \N XREF 5 Sanger Hver 131 MISC \N \N \N
1902 SNGR_Hver \N XREF 5 Sanger Hver MISC \N \N \N
1910 Sanger_Mver1_1_1 \N XREF 5 Sanger Hver 111 MISC \N \N \N
2000 Uniprot/SPTREMBL UniProtKB/TrEMBL Release 2013_07 of 26-Jun-2013 KNOWN 119 UniProtKB/TrEMBL MISC \N \N \N
2001 Uniprot/SPTREMBL_predicted \N PRED 117 Predicted UniProtKB/TrEMBL MISC \N \N \N2010 prediction_SPTREMBL \N XREF 10 Prediction UniProtKB/TrEMBL MISC \N \N \N
2100 Superfamily \N KNOWNXREF 5 Superfamily MISC \N \N \N
2200 Uniprot/SWISSPROT UniProtKB/Swiss-Prot Release 2013_07 of 26-Jun-2013 KNOWN 220 UniProtKB/Swiss-Prot MISC \N \N \N
2201 Uniprot/SWISSPROT_predicted \N PRED 15 Predicted UniProtKB/Swiss-Prot MISC \N \N \N
2202 Uniprot/Varsplic \N KNOWN 15 UniProtKB/SpliceVariant MISC \N \N \N
2250 UniProtKB_all \N XREF 40 UniProtKB generic accession number (TrEMBL or SwissProt not differentiated) MISC \N \N \N
2300 Vega_gene \N KNOWNXREF 5 Vega gene MISC \N \N \N
2305 Vega_gene_like \N XREF 5 Vega gene like MISC \N \N \N
2310 Vega_transcript \N KNOWNXREF 160 Vega transcript MISC \N \N \N
2315 Vega_transcript_like \N XREF 5 Vega transcript like MISC \N \N \N
2320 Vega_translation \N KNOWNXREF 5 Vega translation MISC \N \N \N
2400 wormbase_gene \N KNOWN 5 WormBase Gene MISC \N \N \N
2410 wormbase_transcript \N KNOWN 5 WormBase Transcript MISC \N \N \N
2420 wormpep_id \N KNOWN 5 Wormpep ID MISC \N \N \N
2430 wormbase_pseudogene \N PSEUDO 5 WormBase Pseudogene MISC \N \N \N
2440 wormbase_locus \N KNOWN 5 WormBase Locus MISC \N \N \N
2510 ZFIN_ID \N KNOWNXREF 260 ZFIN PRIMARY_DB_SYNONYM \N \N \N
2530 ZFIN_xpat \N KNOWNXREF 4 ZFIN expression patterns MISC \N \N \N
2600 GeneDB \N KNOWN 5 GeneDB MISC \N \N \N
2601 cint_jgi_v1 \N KNOWN 10 JGI Gene ID (JGI 1.0) MISC \N \N \N
2602 cint_jgi_v2 \N KNOWN 5 JGI Gene ID (JGI 2.0) MISC \N \N \N
2610 cint_aniseed_v1 \N KNOWN 5 ANISEED (JGI 1.0) MISC \N \N \N
2611 cint_aniseed_v2 \N KNOWN 5 ANISEED (JGI 2.0) MISC \N \N \N
2700 Ens_Hs_gene \N XREF 5 Ensembl Human Gene MISC \N \N \N
2710 Ens_Hs_transcript \N XREF 170 Ensembl Human Transcript MISC \N \N \N
2720 Ens_Hs_translation \N XREF 5 Ensembl Human Translation MISC \N \N \N
2800 RGD \N KNOWNXREF 50 RGD Symbol MISC \N \N \N
2900 Genoscope_pred_gene \N XREF 38 Genoscope pred gene MISC \N \N \N
2910 Genoscope_pred_transcript \N XREF 39 Genoscope pred transcript MISC \N \N \N
2920 Genoscope_annotated_gene \N KNOWN 40 Genoscope annotated gene MISC \N \N \N
2930 Genoscope_pred_translation \N XREF 40 Genoscope pred translation MISC \N \N \N
2940 Genoscope_ann_transcript \N KNOWN 40 Genoscope annotated transcript MISC \N \N \N
2950 Genoscope_ann_translation \N KNOWN 40 Genoscope annotated translation MISC \N \N \N
3300 miRBase \N KNOWNXREF 180 miRBase MISC \N \N \N
3310 miRBase_predicted \N XREF 1 miRBase predicted MISC \N \N \N
3400 SGD \N KNOWN 50 SGD MISC \N \N \N
3500 IPI \N KNOWN 5 IPI MISC \N \N \N
3800 CCDS \N KNOWN 240 CCDS MISC \N \N \N
3900 PUBMED \N KNOWN 5 Sequence Publications LIT \N \N \N
4000 MEDLINE \N KNOWN 5 MEDLINE LIT \N \N \N
4100 UniGene 25 Apr 2013 \\t, UniGene Build #236 Homo sapiens KNOWN 5 UniGene MISC \N \N \N
4200 RFAM \N XREF 190 RFAM MISC \N \N \N
4400 Xenopus_Jamboree \N KNOWN 1 Jamboree MISC \N \N \N
4500 Tiffin \N XREF 1 Tiffin DNA motifs MISC \N \N \N
4600 OTTG \N XREF 1 Havana gene ALT_GENE \N \N \N
4610 OTTT \N XREF 1 Havana transcript ALT_TRANS \N \N \N
4620 OTTP \N XREF 1 Havana translation MISC \N \N \N
4650 shares_CDS_with \N XREF 1 transcript having same CDS ALT_TRANS \N \N \N
4670 shares_CDS_with_OTTT \N XREF 1 Havana transcript having same CDS ALT_TRANS \N \N \N
4680 shares_CDS_and_UTR_with_OTTT \N XREF 1 Transcript having exact match between ENSEMBL and HAVANA ALT_TRANS \N \N \N
4690 ENSG \N XREF 1 Ensembl gene ALT_GENE \N \N \N
4700 Medaka \N XREF 1 Medaka Genome Project MISC \N \N \N
4800 ENST \N XREF 1 Ensembl transcript having exact match with Havana ALT_TRANS \N \N \N
4810 ENST_ident \N XREF 1 Ensembl transcript having exact match with Havana ALT_TRANS \N \N \N
4820 ENST_CDS \N XREF 1 Ensembl transcript sharing CDS with Havana ALT_TRANS \N \N \N
4900 TCAG \N KNOWN 75 TCAG Chr 7 Annotation MISC \N \N \N
5000 Ens_Mm_gene \N XREF 40 Ensembl Mouse Gene MISC \N \N \N
5010 Ens_Mm_transcript \N XREF 40 Ensembl Mouse Transcript MISC \N \N \N
5020 Ens_Mm_translation \N XREF 40 Ensembl Mouse Translation MISC \N \N \N
5100 IMGT_HLA \N KNOWN 7 IMGT/HLA MISC \N \N \N
5200 Oxford_FGU_Md_gene \N PRED 1 Oxford Ponting Group Monodelphis predictions gene id MISC \N \N \N
5300 Oxford_FGU_Md_tscript \N PRED 1 Oxford Ponting Group Monodelphis predictions transcript id MISC \N \N Updated from alt_gene to misc due to user query
5400 Oxford_FGU_Oa_gene \N PRED 1 Oxford Ponting Group Platypus predictions gene id MISC \N \N Updated from alt_gene to misc due to user query
5500 Oxford_FGU_Oa_tscript \N PRED 1 Oxford Ponting Group Platypus predictions transcript id MISC \N \N \N
5700 Ens_Cf_gene \N XREF 5 Ensembl Dog Gene MISC \N \N \N
5710 Ens_Cf_transcript \N XREF 5 Ensembl Dog Transcript MISC \N \N \N
5720 Ens_Cf_translation \N XREF 5 Ensembl Dog Translation MISC \N \N \N
5800 Ens_Dr_gene \N XREF 5 Ensembl Zebrafish Gene MISC \N \N \N
5810 Ens_Dr_transcript \N XREF 5 Ensembl Zebrafish Transcript MISC \N \N \N
5820 Ens_Dr_translation \N XREF 5 Ensembl Zebrafish Translation MISC \N \N \N5900 Ens_Md_gene \N XREF 5 Ensembl Monodelphis Gene MISC \N \N \N
5901 Ens_Md_transcript \N XREF 5 Ensembl Monodelphis Transcript MISC \N \N \N
6100 Havana_gene \N XREF 100 Havana gene ID MISC \N \N \N
6200 Ens_Rn_gene \N XREF 5 Ensembl Rat Gene MISC \N \N \N
6300 Ens_Ol_gene \N XREF 5 Ensembl Medaka Gene MISC \N \N \N
6400 Ens_Gg_gene \N XREF 40 Ensembl Chicken Gene MISC \N \N \N
6410 Ens_Gg_transcript \N XREF 40 Ensembl Chicken Transcript MISC \N \N \N
6420 Ens_Gg_translation \N XREF 40 Ensembl Chicken Translation MISC \N \N \N
6500 IMCB_Tr_gene \N XREF 40 IMCB Fugu Gene MISC \N \N \N
6600 Ens_Ag_gene \N XREF 5 Ensembl Mosquito Gene MISC \N \N \N
6630 Ens_Am_gene \N XREF 5 Ensembl Bee Gene MISC \N \N \N
6660 Ens_Ce_gene \N XREF 5 Ensembl Worm Gene MISC \N \N \N
6690 Ens_Dm_gene \N XREF 5 Ensembl FruitFly Gene MISC \N \N \N
6720 Ens_Fr_gene \N XREF 5 Ensembl Fugu Gene MISC \N \N \N
6750 Ens_Pt_gene \N XREF 5 Ensembl Chimpanzee Gene MISC \N \N \N
6810 Ens_Tn_gene \N XREF 5 Ensembl PufferFish Gene MISC \N \N \N
6820 Ens_Tr_transcript \N XREF 40 Ensembl Fugu Transcript MISC \N \N \N
6900 Ens_Ga_translation \N XREF 5 Ensembl Stickleback Translation MISC \N \N \N
7120 Ens_Aa_translation \N XREF 40 Ensembl Aedes Translation MISC \N \N \N
7159 AedesGenBank \N PRED 30 Aedes GenBank MISC \N \N \N
7160 Aedes_ManualAnnotation \N PRED 30 Aedes ManualAnnotation MISC \N \N \N
7170 Ixodes_ManualAnnotation \N PRED 30 Ixodes ManualAnnotation MISC \N \N \N
7180 VB_Community_Annotation 1 KNOWN 50 VB Community Annotation MISC \N \N \N
7200 IMGT/LIGM_DB \N XREF 10 IMGT/LIGM-DB MISC \N \N \N
7201 IMGT/GENE_DB \N KNOWN 40 IMGT/GENE-DB MISC \N \N \N
7300 Ens_Mg_transcript \N XREF 40 Ensembl Turkey Transcript MISC \N \N \N
7400 Ens_Tg_transcript \N XREF 40 Ensembl Zebrafinch Transcript MISC \N \N \N
7500 Ens_St_transcript \N XREF 40 Ensembl Squirrel Transcript MISC \N \N \N
7600 Ens_Fc_transcript \N XREF 40 Ensembl Cat Transcript MISC \N \N \N
7620 Ens_Fc_translation \N XREF 40 Ensembl Cat Translation MISC \N \N \N
8000 Vega_mouse_transcript \N XREF 5 Vega mouse transcript MISC \N \N \N
8100 Platypus_olfactory_receptor \N XREF 40 Platypus olfactory receptor gene MISC \N \N \N
8200 PRF \N XREF 5 PRF MISC \N \N \N
8300 PIR \N XREF 5 PIR MISC \N \N \N
8400 TetNig_cdna \N XREF 40 Genoscope tetraodon cDNA MISC \N \N \N
8500 GasAcu_cdna \N XREF 40 Stickleback cDNA MISC \N \N \N
8600 OrnAna_454_cdna \N XREF 40 Platypus 454 cDNA MISC \N \N \N
8700 TakRub_cdna \N XREF 40 Takifugu cDNA MISC \N \N \N
8800 CioInt_est \N XREF 40 Ciona intestinalis EST MISC \N \N \N
8900 CioInt_cdna \N XREF 40 Ciona intestinalis cDNA MISC \N \N \N
9000 CaeEle_est \N XREF 40 C Elegans EST MISC \N \N \N
9100 XenTro_Gurdon_EST \N XREF 40 Xenopus Gurdon EST Clusters MISC \N \N \N
9110 XenTro_cdna \N XREF 40 Xenopus Tropicalis cDNA MISC \N \N \N
9120 XenLae_cdna \N XREF 40 Xenopus Laevis cDNA MISC \N \N \N
9200 TakRub_est \N XREF 40 Takifugu EST MISC \N \N \N
9210 TakRub_annotation \N XREF 40 Takifugu gene annotation MISC \N \N \N
9220 TakRub_seleno_annotation \N XREF 40 Takifugu selenoprotein annotation MISC \N \N \N
9400 TetNig_mouse_econtig \N XREF 40 Genoscope mouse exofish econtig MISC \N \N \N
9410 TetNig_fugu_econtig \N XREF 40 Genoscope fugu exofish econtig MISC \N \N \N
9420 TetNig_human_econtig \N XREF 40 Genoscope human exofish econtig MISC \N \N \N
9430 TetNig_human_IPI_econtig \N XREF 40 Genoscope human IPI exofish econtig MISC \N \N \N
9440 TetNig_mouse_IPI_econtig \N XREF 40 Genoscope mouse IPI exofish econtig MISC \N \N \N
9450 TetNig_rat_econtig \N XREF 40 Genoscope rat exofish econtig MISC \N \N \N
9460 TetNig_chick_econtig \N XREF 40 Genoscope chicken exofish econtig MISC \N \N \N
9500 OryLat_est \N XREF 40 Medaka EST MISC \N \N \N
9600 Trace_archive \N XREF 40 Trace Archive id MISC \N \N \N
9700 CioSav_est \N XREF 40 Ciona savignyi EST MISC \N \N \N
9800 kyotograil_2004 \N PRED 30 Ciona intestinalis Kyotograil 2004 predictions MISC \N \N \N
9900 kyotograil_2005 \N PRED 30 Ciona intestinalis Kyotograil 2005 predictions MISC \N \N \N
9950 Kyoto_University \N KNOWN 5 Kyoto University MISC \N \N \N
10000 wormbase_id \N XREF 30 Generic exdb for WormBase id of any type for feature table MISC \N \N \N
10100 EPD \N KNOWNXREF 5 Eukaryotic Promoter Database (Bucher) MISC \N \N \N
10200 GPCR \N KNOWNXREF 5 The G protein-coupled receptor database MISC \N \N \N
10300 MEROPS \N KNOWNXREF 5 MEROPS - the Peptidase Database MISC \N \N \N
10500 TransFac \N KNOWNXREF 5 TransFac, database of transcription factors and their binding sites MISC \N \N \N
10600 modCB_gene \N KNOWNXREF 5 Caenorhabditis briggsae, InParanoid model organism database MISC \N \N \N
10700 modCE_gene \N KNOWNXREF 5 Caenorhabditis elegans, InParanoid model organism database MISC \N \N \N
10800 modDD_gene \N KNOWNXREF 5 Dictyostelium discoideum, InParanoid model organism database MISC \N \N \N
10900 GI \N XREF 5 GenInfo Identifier, a sequence identification number for a nucleotide sequence MISC \N \N \N
11000 UCSC \N KNOWNXREF 100 UCSC Stable ID MISC \N \N \N11100 Culex_ncRNA \N XREF 70 Culex ncRNAs MISC \N \N \N
12300 HGNC_curated_gene \N KNOWNXREF 5 HGNC (curated) MISC \N \N \N
12305 HGNC_automatic_gene \N KNOWNXREF 5 HGNC (automatic) MISC \N \N \N
12310 Clone_based_vega_gene \N KNOWNXREF 5 Clone-based (Vega) MISC \N \N \N
12315 Clone_based_ensembl_gene \N XREF 5 Clone-based (Ensembl) MISC \N \N \N
12400 HGNC_curated_transcript \N KNOWNXREF 300 HGNC (curated) MISC \N \N \N
12405 HGNC_automatic_transcript \N KNOWNXREF 290 HGNC (automatic) MISC \N \N \N
12410 Clone_based_vega_transcript \N KNOWNXREF 5 Clone-based (Vega) MISC \N \N \N
12415 Clone_based_ensembl_transcript \N XREF 5 Clone-based (Ensembl) MISC \N \N \N
12500 DBASS3 \N XREF 50 DataBase of Aberrant 3' Splice Sites MISC \N \N \N
12505 DBASS5 \N XREF 50 DataBase of Aberrant 5' Splice Sites MISC \N \N \N
12510 HPA \N XREF 50 Human Protein Atlas MISC \N \N \N
12550 MGI_curated_gene \N KNOWNXREF 5 MGI (curated) MISC \N \N \N
12555 MGI_automatic_gene \N KNOWNXREF 5 MGI (automatic) MISC \N \N \N
12560 MGI_curated_transcript \N KNOWNXREF 140 MGI (curated) MISC \N \N \N
12565 MGI_automatic_transcript \N KNOWNXREF 279 MGI (automatic) MISC \N \N \N
12600 WikiGene \N XREF 50 WikiGene MISC \N \N \N
12601 Tgut_symbol \N KNOWNXREF 100 Tgut symbol - Prof. David Burt, Roslin Institute and Royal (Dick) School of Veterinary Studies, Edinburgh University, UK PRIMARY_DB_SYNONYM \N \N \N
12610 Fantom \N XREF 50 Fantom MISC \N \N \N
12620 Duck_consortium \N XREF 0 Duck consortium MISC \N \N \N
12630 BGI_duck_transcriptome \N XREF 0 Beijing Genomics Institute (BGI) duck transcriptome MISC \N \N \N
12700 goslim_goa \N XREF 5 GOSlim GOA MISC \N \N \N
12701 goslim_generic \N XREF 5 GOSlim Generic MISC \N \N \N
12710 WTSI_gorilla_transcriptome \N XREF 0 Wellcome Trust Sanger Institute (WTSI) gorilla transcriptome MISC \N \N \N
12720 WTSI_zebrafish_transcriptome \N XREF 0 Wellcome Trust Sanger Institute (WTSI) zebrafish transcriptome MISC \N \N \N
20005 UniParc \N KNOWNXREF 0 UniParc PRIMARY_DB_SYNONYM \N \N \N
20008 BRENDA \N KNOWNXREF 0 BRENDA PRIMARY_DB_SYNONYM \N \N \N
20009 BioCyc \N KNOWNXREF 0 BioCyc PRIMARY_DB_SYNONYM \N \N \N
20010 BuruList \N KNOWNXREF 0 BuruList PRIMARY_DB_SYNONYM \N \N \N
20013 EchoBASE \N KNOWNXREF 0 EchoBASE PRIMARY_DB_SYNONYM \N \N \N
20014 EcoGene \N KNOWNXREF 0 EcoGene PRIMARY_DB_SYNONYM \N \N \N
20017 GeneDB_Spombe \N KNOWNXREF 0 GeneDB_Spombe PRIMARY_DB_SYNONYM \N \N \N
20025 Leproma \N KNOWNXREF 0 Leproma PRIMARY_DB_SYNONYM \N \N \N
20031 2DBase_Ecoli \N KNOWNXREF 0 2DBase-Ecoli PRIMARY_DB_SYNONYM \N \N \N
20038 SagaList \N KNOWNXREF 0 SagaList PRIMARY_DB_SYNONYM \N \N \N
20040 SubtiList \N KNOWNXREF 0 SubtiList PRIMARY_DB_SYNONYM \N \N \N
20042 TIGR \N KNOWNXREF 0 TIGR PRIMARY_DB_SYNONYM \N \N \N
20043 TubercuList \N KNOWNXREF 0 TubercuList PRIMARY_DB_SYNONYM \N \N \N
20046 ArrayExpress \N XREF 0 ArrayExpress MISC \N \N \N
20050 GermOnline \N KNOWNXREF 0 GermOnline PRIMARY_DB_SYNONYM \N \N \N
20059 DIP \N KNOWNXREF 0 DIP PRIMARY_DB_SYNONYM \N \N \N
20061 DisProt \N KNOWNXREF 0 DisProt PRIMARY_DB_SYNONYM \N \N \N
20062 DrugBank \N KNOWNXREF 0 DrugBank PRIMARY_DB_SYNONYM \N \N \N
20065 GlycoSuiteDB \N KNOWNXREF 0 GlycoSuiteDB PRIMARY_DB_SYNONYM \N \N \N
20066 HAMAP \N KNOWNXREF 0 HAMAP PRIMARY_DB_SYNONYM \N \N \N
20067 HOGENOM \N KNOWNXREF 0 HOGENOM PRIMARY_DB_SYNONYM \N \N \N
20071 HSSP \N KNOWNXREF 0 HSSP PRIMARY_DB_SYNONYM \N \N \N
20072 IntAct \N KNOWNXREF 0 IntAct PRIMARY_DB_SYNONYM \N \N \N
20074 KEGG \N KNOWNXREF 0 KEGG PRIMARY_DB_SYNONYM \N \N \N
20078 PDBsum \N KNOWNXREF 0 PDBsum PRIMARY_DB_SYNONYM \N \N \N
20082 PeroxiBase \N KNOWNXREF 0 PeroxiBase PRIMARY_DB_SYNONYM \N \N \N
20083 PhosSite \N KNOWNXREF 0 PhosSite PRIMARY_DB_SYNONYM \N \N \N
20084 PptaseDB \N KNOWNXREF 0 PptaseDB PRIMARY_DB_SYNONYM \N \N \N
20085 REBASE \N KNOWNXREF 0 REBASE PRIMARY_DB_SYNONYM \N \N \N
20088 Reactome \N KNOWNXREF 0 Reactome PRIMARY_DB_SYNONYM \N \N \N
20090 SWISS_2DPAGE \N KNOWNXREF 0 SWISS-2DPAGE PRIMARY_DB_SYNONYM \N \N \N
20097 RegulonDb_Transcript \N KNOWNXREF 0 RegulonDb PRIMARY_DB_SYNONYM \N \N \N
20099 RegulonDb_Gene \N KNOWNXREF 0 RegulonDb PRIMARY_DB_SYNONYM \N \N \N
20101 IntEnz \N KNOWNXREF 0 EnzymeCommission PRIMARY_DB_SYNONYM \N \N \N
20102 ArrayExpressExperiment \N XREF 0 ArrayExpressExperiment MISC \N \N \N
20200 EMBLBANK_GENE \N KNOWNXREF 117 European Nucleotide Archive PRIMARY_DB_SYNONYM \N \N \N
20201 GeneDB_SPombe_transcript \N KNOWNXREF 0 GeneDB_SPombe PRIMARY_DB_SYNONYM \N \N \N
20202 EBACTERIA_GENE \N KNOWNXREF 0 e!Bacteria PRIMARY_DB_SYNONYM \N \N \N
20203 EBACTERIA_TRANSCRIPT \N KNOWNXREF 0 e!Bacteria PRIMARY_DB_SYNONYM \N \N \N
20204 EPROTIST_GENE \N KNOWNXREF 0 e!Protists PRIMARY_DB_SYNONYM \N \N \N
20205 EPROTIST_TRANSCRIPT \N KNOWNXREF 0 e!Protists PRIMARY_DB_SYNONYM \N \N \N
20207 EFUNGI_GENE \N KNOWNXREF 0 e!Fungi PRIMARY_DB_SYNONYM \N \N \N
20208 EFUNGI_TRANSCRIPT \N KNOWNXREF 0 e!Fungi PRIMARY_DB_SYNONYM \N \N \N
20209 EMBLBANK_TRANSCRIPT \N KNOWNXREF 115 European Nucleotide Archive PRIMARY_DB_SYNONYM \N \N \N
20210 GeneDB_SPombe_gene \N KNOWNXREF 0 GeneDB_SPombe PRIMARY_DB_SYNONYM \N \N \N20214 phatr_jgi_v2_bd \N KNOWNXREF 0 JGI ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N \N
20215 phatr_jgi_v2 \N KNOWNXREF 0 JGI ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N
20216 phatr_jgi_v2_bd_gene \N KNOWNXREF 0 JGI Gene ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N \N
20217 phatr_jgi_v2_gene \N KNOWNXREF 0 JGI Gene ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N
20218 phatr_jgi_v2_bd_transcript \N KNOWNXREF 0 JGI transcript ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N \N
20219 phatr_jgi_v2_transcript \N KNOWNXREF 0 JGI transcript ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N
20220 thaps_jgi_v2_bd \N KNOWNXREF 0 JGI ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N \N
20221 thaps_jgi_v2 \N KNOWNXREF 0 JGI ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N
20222 thaps_jgi_v2_gene \N KNOWNXREF 0 JGI Gene ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N
20223 thaps_jgi_v2_bd_gene \N KNOWNXREF 0 JGI Gene ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N \N
20225 thaps_jgi_v2_bd_transcript \N KNOWNXREF 0 JGI transcript ID (JGI 2.0 unmapped sequence) PRIMARY_DB_SYNONYM \N \N \N
20226 thaps_jgi_v2_transcript \N KNOWNXREF 0 JGI transcript ID (JGI 2.0) PRIMARY_DB_SYNONYM \N \N \N
20227 Diatom_EST_Cluster \N XREF 0 ENS EST Cluster (Diatom ESTDB) MISC \N \N \N
20228 CADRE_Afum_A1163 \N KNOWNXREF 0 CADRE PRIMARY_DB_SYNONYM \N \N \N
20301 RNAMMER \N KNOWNXREF 0 RNAmmer MISC \N \N \N
20302 TRNASCAN_SE \N KNOWNXREF 0 tRNAScan-SE MISC \N \N \N
20303 dictyBase \N KNOWNXREF 0 DictyBase PRIMARY_DB_SYNONYM \N \N \N
20304 dictyBase_gene \N KNOWNXREF 0 DictyBase PRIMARY_DB_SYNONYM \N \N \N
20305 dictyBase_transcript \N KNOWNXREF 0 DictyBase PRIMARY_DB_SYNONYM \N \N \N
20306 ASPGD \N KNOWNXREF 0 AspGD PRIMARY_DB_SYNONYM \N \N \N
20307 ASPGD_GENE \N KNOWNXREF 0 AspGD PRIMARY_DB_SYNONYM \N \N \N
20308 ASPGD_TRANSCRIPT \N KNOWNXREF 0 AspGD PRIMARY_DB_SYNONYM \N \N \N
20309 CADRE \N KNOWNXREF 0 CADRE PRIMARY_DB_SYNONYM \N \N \N
20310 CADRE_GENE \N KNOWNXREF 0 CADRE PRIMARY_DB_SYNONYM \N \N \N
20311 CADRE_TRANSCRIPT \N KNOWNXREF 0 CADRE PRIMARY_DB_SYNONYM \N \N \N
20312 SGD_GENE \N KNOWNXREF 0 SGD PRIMARY_DB_SYNONYM \N \N \N
20313 SGD_TRANSCRIPT \N KNOWNXREF 0 SGD PRIMARY_DB_SYNONYM \N \N \N
20314 BROAD_PUCCINIA_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20315 BROAD_PUCCINIA_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20316 BROAD_PUCCINIA 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20317 phyra_jgi_v1.1 1.1 KNOWNXREF 0 JGI ID (JGI 1.1) PRIMARY_DB_SYNONYM \N \N \N
20318 phyra_jgi_v1.1_gene 1.1 KNOWNXREF 0 JGI Gene ID (JGI 1.1) PRIMARY_DB_SYNONYM \N \N \N
20319 phyra_jgi_v1.1_transcript 1.1 KNOWNXREF 0 JGI transcript ID (JGI 1.1) PRIMARY_DB_SYNONYM \N \N \N
20320 physo1_jgi_v1.1 1.1 KNOWNXREF 0 JGI ID (JGI 1.1) PRIMARY_DB_SYNONYM \N \N \N
20321 physo1_jgi_v1.1_gene 1.1 KNOWNXREF 0 JGI Gene ID (JGI 1.1) PRIMARY_DB_SYNONYM \N \N \N
20322 physo1_jgi_v1.1_transcript 1.1 KNOWNXREF 0 JGI transcript ID (JGI 1.1) PRIMARY_DB_SYNONYM \N \N \N
20323 BROAD_P_infestans_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20324 BROAD_P_infestans_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20325 BROAD_P_infestans 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20326 BROAD_M_oryzae_GENE 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20327 BROAD_M_oryzae_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20328 BROAD_M_oryzae 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20329 triad_jgi_v1.0_gene 1 KNOWNXREF 0 JGI Gene ID (JGI Triad 1.0) PRIMARY_DB_SYNONYM \N \N \N
20330 triad_jgi_v1.0_transcript 1 KNOWNXREF 0 JGI Transcript ID (JGI Triad 1.0) PRIMARY_DB_SYNONYM \N \N \N
20331 triad_jgi_v1.0 1 KNOWNXREF 0 JGI ID (JGI Triad 1.0) MISC \N \N \N
20332 GeneDB_GENE 1 KNOWNXREF 0 GeneDB Gene ID PRIMARY_DB_SYNONYM \N \N \N
20333 GeneDB_TRANSCRIPT 1 KNOWNXREF 0 GeneDB Transcript ID PRIMARY_DB_SYNONYM \N \N \N
20334 SCHISTODB 1 KNOWNXREF 0 SchistoDB MISC \N \N \N
20335 SCHISTODB_GENE 1 KNOWNXREF 0 SchistoDB PRIMARY_DB_SYNONYM \N \N \N
20336 SCHISTODB_TRANSCRIPT 1 KNOWNXREF 0 SchistoDB PRIMARY_DB_SYNONYM \N \N \N
20337 BROAD_F_oxysporum 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20338 BROAD_F_oxysporum_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20339 BROAD_F_oxysporum_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20340 BROAD_G_zeae 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20341 BROAD_G_zeae_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20342 BROAD_G_zeae_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20343 BROAD_G_moniliformis 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20344 BROAD_G_moniliformis_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20345 BROAD_G_moniliformis_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20346 GeneDB_TRANSLATION 1 KNOWNXREF 0 GeneDB Translation ID PRIMARY_DB_SYNONYM \N \N \N
20347 PGD 1 KNOWNXREF 0 Pythium genome database MISC \N \N \N
20348 PGD_GENE 1 KNOWNXREF 0 Pythium genome database PRIMARY_DB_SYNONYM \N \N \N
20349 PGD_TRANSCRIPT 1 KNOWNXREF 0 Pythium genome database PRIMARY_DB_SYNONYM \N \N \N
20350 RegulonDb_Operon \N KNOWNXREF 0 RegulonDb PRIMARY_DB_SYNONYM \N \N \N
20351 BROAD_N_crassa_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20352 BROAD_N_crassa_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20353 BROAD_N_crassa 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20354 BROAD_U_maydis 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20355 BROAD_U_maydis_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20356 BROAD_U_maydis_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N20357 BROAD_P_triticina 1 KNOWNXREF 0 Broad Institute MISC \N \N \N
20358 BROAD_P_triticina_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20359 BROAD_P_triticina_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20360 SpBase 1 KNOWNXREF 0 SpBase MISC \N \N \N
20361 PHIbase 3.2 XREF 50 PHI-base MISC \N \N \N
20362 necha_jgi_v2.0_gene 2 KNOWNXREF 0 Nectria JGI gene PRIMARY_DB_SYNONYM \N \N \N
20363 necha_jgi_v2.0_transcript 2 KNOWNXREF 0 Nectria JGI transcript PRIMARY_DB_SYNONYM \N \N \N
20364 necha_jgi_v2.0 2 KNOWNXREF 0 Nectria JGI MISC \N \N \N
20365 tuber_genoscope_gene 1 KNOWNXREF 0 Tuber Genome Browser PRIMARY_DB_SYNONYM \N \N \N
20366 tuber_genoscope_transcript 2 KNOWNXREF 0 Tuber Genome Browser PRIMARY_DB_SYNONYM \N \N \N
20367 tuber_genoscope 2 KNOWNXREF 0 Tuber Genome Browser MISC \N \N \N
20368 Mycgr3_jgi_v2.0_gene 2 KNOWNXREF 0 Mycosphaerella JGI gene PRIMARY_DB_SYNONYM \N \N \N
20369 Mycgr3_jgi_v2.0_transcript 2 KNOWNXREF 0 Mycosphaerella JGI transcript PRIMARY_DB_SYNONYM \N \N \N
20370 Mycgr3_jgi_v2.0 2 KNOWNXREF 0 Mycosphaerella JGI MISC \N \N \N
20371 BROAD_P_NODORUM 1 KNOWNXREF 0 Broad Phaeosphaeria nodorum MISC \N \N \N
20372 BROAD_P_NODORUM_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20373 BROAD_P_NODORUM_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N \N
20375 PomBase 1 KNOWN 0 PomBase MISC \N \N \N
20376 PomBase_GENE 1 KNOWNXREF 0 PomBase PRIMARY_DB_SYNONYM \N \N \N
20377 PomBase_TRANSCRIPT \N KNOWNXREF 0 PomBase PRIMARY_DB_SYNONYM \N \N \N
20378 PomBase_TRANSLATION 1 KNOWNXREF 0 PomBase PRIMARY_DB_SYNONYM \N \N \N
20379 SPO \N KNOWNXREF 0 SPO ID MISC \N \N \N
20380 CBS \N KNOWNXREF 0 CBS Server MISC \N \N \N
20381 COG \N KNOWNXREF 0 Cluster of Orthologous Groups (NCBI) MISC \N \N \N
20382 CGD \N KNOWN 0 Candida Genome Database MISC \N \N \N
20383 ProSite \N XREF 0 ProSite ID MISC \N \N \N
20385 SMART \N XREF 0 SMART ID MISC \N \N \N
20386 SPD \N KNOWNXREF 0 SPD ID MISC \N \N \N
20387 KOG \N KNOWNXREF 0 KOG ID MISC \N \N \N
20388 PBO \N KNOWNXREF 0 PomBase Ontology ID MISC \N \N \N
20389 FYPO \N KNOWNXREF 0 Fission Yeast Phenotype Ontology MISC \N \N \N
20390 MOD \N KNOWNXREF 0 PSI-MOD, Post Translational Modification Ontology MISC \N \N \N
20391 AGD_GENE 1 KNOWNXREF 0 Ashbya Genome Database PRIMARY_DB_SYNONYM \N \N \N
20392 AGD_TRANSCRIPT 1 KNOWNXREF 0 Ashbya Genome Database PRIMARY_DB_SYNONYM \N \N \N
20393 AGD 1 KNOWNXREF 0 Ashbya Genome Database MISC \N \N \N
20394 FYPO_GENE 1 KNOWNXREF 0 Fission Yeast Phenotype Ontology MISC \N \N \N
20395 FYPO_TRANSCRIPT 1 KNOWNXREF 0 Fission Yeast Phenotype Ontology MISC \N \N \N
50000 BGI_EST_Cluster \N XREF 0 EST Cluster (BGI Indica) MISC \N \N \N
50005 EC_NUMBER \N XREF 0 Enzyme EC Number MISC \N \N \N
50010 FSTs \N XREF 0 Flanking Sequence Tag (FST) MISC \N \N \N
50015 gene_name \N KNOWNXREF 0 Gene Name MISC \N \N \N
50020 Gramene_Pathway \N XREF 0 Gramene Pathway MISC \N \N \N
50030 Gramene_GenesDB \N KNOWNXREF 100 Gramene Curated Gene MISC \N \N \N
50035 Gramene_MarkersDB \N XREF 0 Gramene MISC \N \N \N
50040 Gramene_MarkersDB_mRNA \N XREF 0 GenBank mRNA (Gramene) MISC \N \N \N
50050 Gramene_MarkersDB_EST \N XREF 0 GenBank EST (Gramene) MISC \N \N \N
50060 IRGSP_Gene \N XREF 0 IRGSP/RAP Gene MISC \N \N \N
50065 KOME \N KNOWNXREF 0 Full Length cDNA (KOME) MISC \N \N \N
50070 miRNA_Accession \N XREF 0 miRNA miRBase accession MISC \N \N \N
50080 miRNA_Registry \N XREF 1 miRNA Registry MISC \N \N \N
50090 NASC_GENE_ID \N XREF 1 NASC Gene ID MISC \N \N \N
50100 NASC_TRANSCRIPT_ID \N XREF 1 NASC Transcript ID MISC \N \N \N
50110 PlantGDB_PUT \N XREF 1 PlantGDB Transcript MISC \N \N \N
50120 RAP_Gene \N XREF 0 IRGSP/RAP Gene MISC \N \N \N
50130 siRNA_Sunkar \N XREF 0 siRNA ID from Sunkar et. al. 2005 NAR 33(14):4443-54 MISC \N \N \N
50140 TIGR_LOCUS \N XREF 1 MSU/TIGR Locus MISC \N \N \N
50150 TIGR_LOCUS_MODEL \N XREF 0 MSU/TIGR Locus (Model) MISC \N \N \N
50160 TAIR_LOCUS \N XREF 8 TAIR Locus MISC \N \N \N
50170 TAIR_LOCUS_MODEL \N XREF 8 TAIR Locus (Model) MISC \N \N \N
50180 TIGR_GeneIndex \N XREF 0 Gene Index MISC \N \N \N
50185 TO \N XREF 0 Plant Trait Ontology MISC \N \N \N
50190 PO \N XREF 0 Plant Structure Ontology MISC \N \N \N
50195 PO_to_gene \N XREF 0 Plant Structure Ontology MISC \N \N \N
50196 GO_to_gene \N XREF 0 Gene Ontology MISC \N \N \N
50200 GRO \N XREF 0 Plant Growth Stage MISC \N \N \N
50510 AFFY_RICE \N XREF 1 Affymx GeneChip Rice ARRAY \N \N \N
50520 AFFY_ATH1 \N XREF 1 Affymx GeneChip ATH1 ARRAY \N \N \N
50530 AFFY_Vitis_Vinifera \N XREF 1 Affymx GeneChip Vitis vinifera ARRAY \N \N \N
50540 AFFY_Poplar \N XREF 1 Affymx GeneChip Poplar ARRAY \N \N \N
50541 LRG \N KNOWN 10 Locus Reference Genomic MISC \N \N \N50542 ENS_LRG_gene \N KNOWN 10 LRG display in Ensembl MISC \N \N \N
50543 ENS_LRG_transcript \N KNOWN 10 LRG display in Ensembl MISC \N \N \N
50600 IKMCs_KOs \N XREF 10 International Knockout Mouse Consortium Knockouts MISC \N \N Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse
50601 IKMCs_ES_cells_available \N XREF 10 International Knockout Mouse Consortium Knockouts (ES cells available) MISC \N \N Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (ES cells available)
50602 IKMCs_Mice_available \N XREF 10 International Knockout Mouse Consortium Knockouts (Mice available) MISC \N \N Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (Mice available)
50603 IKMCs_No_products_available_yet \N XREF 10 International Knockout Mouse Consortium Knockouts (No products available yet) MISC \N \N Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (No products available yet)
50604 IKMCs_Vector_available \N XREF 10 International Knockout Mouse Consortium Knockouts (Vector available) MISC \N \N Mouse lines produced as part of a high throughput strategy by the International Knockout Mouse Consortium to knock out every protein coding gene in mouse (Vector available)
50605 RFAM_gene_name \N KNOWNXREF 5 RFAM gene name MISC \N \N gene name from RFAM
50606 miRBase_gene_name \N KNOWNXREF 5 miRBase gene name MISC \N \N gene name from miRBase
50607 miRBase_trans_name \N KNOWNXREF 5 miRBase transcript name MISC \N \N transcript name from miRBase
50608 RFAM_trans_name \N KNOWNXREF 5 RFAM transcript name MISC \N \N transcript name from RFAM
50609 HGNC_trans_name \N KNOWNXREF 5 HGNC transcript name MISC \N \N transcript name from HGNC
50610 MGI_trans_name \N KNOWNXREF 5 MGI transcript name MISC \N \N transcript name from MGI
50611 ZFIN_ID_trans_name \N KNOWNXREF 5 ZFIN transcript name MISC \N \N transcript name from ZFIN
50612 LampreyGenomeProject \N KNOWN 1 Lamprey Genome Project MISC \N \N \N
50620 Illumina_Bodymap_transcriptome \N XREF 0 Illumina Bodymap transcriptome MISC \N \N \N
50621 Uniprot_gn \N KNOWN 116 UniProtKB Gene Name MISC \N \N \N
50622 GGSC \N KNOWNXREF 0 Gibbon Genome Sequencing Consortium MISC \N \N Gibbon Genome Sequencing Consortium
50623 Broad Institute \N KNOWN 5 Broad Institute of MIT and Harvard MISC \N \N \N
50624 PFAM \N XREF 0 PFAM MISC \N \N Pfam from Vega
50625 SGSC \N KNOWN 5 Swine Genome Sequencing Consortium MISC \N \N \N
50626 RIKEN \N KNOWN 5 Riken Institute MISC \N \N \N
50627 SHSC \N KNOWNXREF 0 Tasmanian Devil Sequencing Consortium MISC \N \N Tasmanian Devil Genome Sequencing Consortium
50628 PFAM 22 XREF 0 PFAM MISC \N \N Pfam release 22, from Vega
50629 PFAM 23 XREF 0 PFAM MISC \N \N Pfam release 23, from Vega
50630 PFAM 24 XREF 0 PFAM MISC \N \N Pfam release 24, from Vega
50631 PFAM 25 XREF 0 PFAM MISC \N \N Pfam release 25, from Vega
50632 PFAM 26 XREF 0 PFAM MISC \N \N Pfam release 26, from Vega
50633 GRC_primary_assembly \N XREF 0 GRC primary assembly MISC \N \N Primary assembly of this species genome from the GRC
50634 Ens_Ga_gene \N XREF 5 Ensembl Stickleback Gene MISC \N \N \N
50635 Ens_Ga_transcript \N XREF 170 Ensembl Stickleback Transcript MISC \N \N \N
50637 CSAC \N KNOWN 5 Chimpanzee Sequencing and Analysis Consortium MISC \N \N \N
50640 PomBase_Interaction_GENETIC 1 KNOWNXREF 5 PomBase Interaction Genetic MISC \N \N \N
50641 PomBase_Interaction_PHYSICAL 1 KNOWNXREF 5 PomBase Interaction Physical MISC \N \N \N
50642 PomBase_Gene_Name 1 KNOWNXREF 5 PomBase Gene Name MISC \N \N \N
50643 PomBase_Systematic_ID 1 KNOWNXREF 5 PomBase Systematic ID MISC \N \N \N
50644 PomBase_Ortholog 1 KNOWNXREF 5 Orthologous Gene MISC \N \N \N
50645 Ens_Ss_translation \N XREF 5 Ensembl Pig Translation MISC \N \N \N
50646 Psinensis_sequencing_consortium \N KNOWN 5 Pelodiscus sinensis sequencing consortium MISC \N \N \N
50647 BROAD_Magnaporthe_DB 1 KNOWNXREF 0 Magnaporthe comparative DB MISC \N \N Broad Institute Magnaporthe comparative Database
50648 BROAD_Magnaporthe_DB_GENE 1 KNOWNXREF 0 Magnaporthe comparative DB PRIMARY_DB_SYNONYM \N \N Broad Institute Magnaporthe comparative Database
50649 BROAD_Magnaporthe_DB_TRANSCRIPT 1 KNOWNXREF 0 Magnaporthe comparative DB PRIMARY_DB_SYNONYM \N \N Broad Institute Magnaporthe comparative Database
50650 BGI Shenzhen \N KNOWN 5 Beijing Genomics Institute, Shenzhen MISC \N \N \N
50651 ICGSC \N KNOWN 5 International Cat Genome Sequencing Consortium MISC \N \N \N
50652 SGD_TRANSLATION 1 KNOWNXREF 0 SGD MISC \N \N SGD Mapping attached to S.cerevisiae translations objects so we can attach GO dependant annotations at the translation level as well.
50653 WashingtonUniversity \N KNOWN 5 The Genome Institute, Washington University School of Medicine MISC \N \N \N
50654 BDGP_cDNA 1 KNOWN 50 Fly cDNA MISC \N \N cDNA from the Berkeley Drosophila Genome Project
50655 BDGP_cDNA_Gold_Collection 1 KNOWN 50 Fly gold cDNA MISC \N \N Gold Collection cDNA from the Berkeley Drosophila Genome Project
50656 Ens_Tg_translation \N KNOWN 5 Ensembl Zebrafinch Translation MISC \N \N \N
50657 BudgerigarGenomeProject \N KNOWN 0 Budgerigar Genome Project MISC \N \N Melopsittacus undulatus sequenced by Washington University School of Medicine
50658 ToxoDB 1 KNOWNXREF 1 ToxoDB PRIMARY_DB_SYNONYM \N \N Toxoplasma Genomic Resource Database.
50659 Orphanet 1.0.20 [2012-12-14] XREF 50 Orphanet MISC \N \N Database of rare diseases and orphan drugs
50660 SO 1 KNOWNXREF 0 Sequence Ontology MISC \N \N Sequence Ontology
50661 BRAD_GENE 1 XREF 5 BrassEnsembl MISC \N \N The Brassica Genome Database
50662 BRAD_TRANSCRIPT 1 XREF 5 BrassEnsembl MISC \N \N The Brassica Genome Database
50663 Quick_Go \N KNOWN 1 GOA MISC \N \N Resource to show GOA records for Uniprot Accessions
50664 Quick_Go_Evidence \N KNOWN 1 Quick Go MISC \N \N Resource to show GOA view of original annotation sources
50665 Painted_Turtle_Consortium 3.0.1 KNOWN 5 International Painted Turtle Genome Sequencing Consortium MISC \N \N http://www.ncbi.nlm.nih.gov/genome/assembly/326468/
50666 IGDBCAS-v1.4_GENE 1.4 KNOWN 1 IGDBCAS v1.4 Gene MISC \N \N \N
50667 IGDBCAS-v1.4_TRANSCRIPT 1.4 KNOWN 1 IGDBCAS v1.4 Transcript MISC \N \N \N
50668 JGI_GENE 1 XREF 1 JGI Gene MISC \N \N gene ID/NAME in the JGI gff3 file
50669 JGI_TRANSCRIPT 1 XREF 1 JGI Transcript MISC \N \N transcript/mRNA ID/NAME in the JGI gff3 file
50670 ITAG_GENE ITAG_pre2.3 KNOWNXREF 0 ITAG pre2.3 Gene MISC \N \N \N
50671 ITAG_TRANSCRIPT ITAG_pre2.3 KNOWNXREF 1 ITAG pre2.3 Transcript MISC \N \N \N
50672 IRGSPv1_GENE 1 KNOWNXREF 1 IRGSP v1 Gene MISC \N \N \N
50673 IRGSPv1_TRANSCRIPT 1 KNOWNXREF 1 IRGSP v1 Transcript MISC \N \N \N
50674 Ens_Lc_gene \N XREF 5 Ensembl Coelacanth Gene MISC \N \N \N
50675 Ens_Lc_transcript \N XREF 170 Ensembl Coelacanth Transcript MISC \N \N \N
50676 Ens_Lc_translation \N XREF 5 Ensembl Coelacanth Translation MISC \N \N \N
50677 RGSC \N KNOWNXREF 0 Rat Genome Sequencing Consortium MISC \N \N Rat Genome Sequencing Consortium50678 BROAD_coelacanth_transcriptome \N XREF 0 BROAD Institute coelacanth transcriptome MISC \N \N \N
50679 Ens_Ac_translation \N XREF 40 Ensembl Anole Lizard Translation MISC \N \N \N
50680 Ens_Ac_gene \N XREF 40 Ensembl Anole Lizard Gene MISC \N \N \N
50681 Ens_Ac_transcript \N XREF 40 Ensembl Anole Lizard Transcript MISC \N \N \N
50682 BGI_Gene 1 XREF 50 BGI_2005_indica_Gene MISC \N \N BGI gene identifier
50683 GeneIndex 1 XREF 50 GeneIndex MISC \N \N \N
50684 EO 1 XREF 0 Environment Ontology MISC \N \N Plant environmental conditions ontology terms.\nMore information in there:\nhttp://www.gramene.org/plant_ontology/ontology_browse.html#eo
50685 Ens_Rn_transcript \N XREF 5 Ensembl Rat Transcript MISC \N \N \N
50686 Ens_Rn_translation \N XREF 5 Ensembl Rat Translation MISC \N \N \N
50687 Uppsala University \N KNOWN 5 Uppsala University MISC \N \N \N
50688 GenBank 1 XREF 1 GenBank MISC \N \N GenBank identifier
50689 MaizeGDB_GenBank 1 XREF 1 MaizeGDB_GenBank MISC \N \N GenBank identifiers for Maize Genome DB entries.
50690 RefSeq_gene_name \N KNOWN 200 RefSeq gene name MISC \N \N This is read out of the *.gff files provided to us by the NCBI when we do a RefSeq import or a CCDS comparison. It has the key "gene_id" and is found at the start of the 9th field.
50691 SGN 1 KNOWNXREF 1 Sol Genomics Network MISC \N \N \N
50692 GRC_alignment_import \N XREF 0 GRC alignment import MISC \N \N Imported alignments from the Genome Reference Consortium.
50693 BROAD_monodelphis_transcriptome \N XREF 0 Broad Institute transcriptome data for monodelphis MISC \N \N \N
50694 SIB_mondelphis_transcriptome \N XREF 0 Swiss Institute of Bioinformatics transcriptome data for monodelphis MISC \N \N \N
50695 SIB_platypus_transcriptome \N XREF 0 Swiss Institute of Bioinformatics transcriptome data for platypus MISC \N \N \N
50696 SIB_orangutan_transcriptome \N XREF 0 Swiss Institute of Bioinformatics transcriptome data for orangutan MISC \N \N \N
50697 NCBI_TAXONOMY 1 KNOWNXREF 1 NCBI species MISC \N \N Organism listed in NCBI
50698 PHI 1 KNOWNXREF 1 PHI-base accession MISC \N \N Parasite-host interaction identifiers from PHI-base
50700 AnoXcel 2 KNOWN 50 AnoXcel MISC \N \N VectorBase xref.
50701 PGSC_GENE 1 XREF 1 PGSC MISC \N \N Potato Genome Sequencing Consortium database
50702 PHYTOZOME_GMAX_GENE 1.1 XREF 1 Phytozome MISC \N \N Phytozome Gmax
50703 Uniprot_gn_trans_name \N KNOWNXREF 5 UniProt transcript name MISC \N \N transcript name projected from UniProt gene name
50705 Uniprot_gn_gene_name \N KNOWNXREF 5 UniProt gene name MISC \N \N gene name from UniProt
50707 Ensembl_Bam2Genes_intron \N PRED 5 Intron identified by Ensembl RNASeq pipeline MISC \N \N Ensembl_Bam2Genes_intron are the introns indentified at the bam2genes stage in the Ensembl RNAseq pipeline. They are stored as Clusters in the dna_align_feature table.
50708 GMGC_GENE 1 KNOWNXREF 1 GMGC PRIMARY_DB_SYNONYM \N \N Global Musa Genomics Consortium gene cross-references
50709 tamu_vibs \N KNOWN 0 TAMU VIBS MISC \N \N The Texas A&M College of Veterinary Medicine & Biomedical Sciences, Department of Veterinary Integrative Biosciences.
50710 INSDC 0 KNOWNXREF 5 International Nucleotide Sequence Database Collaboration MISC INSDC \N This external_db_id was initially made for use in the seq_region_synonym table. For species such as human, cow, dog we store chromosome names (1-22, X,Y) in the name column of the seq_region table. The INSDC accession is stored as a synonym.
50711 ISGC \N KNOWNXREF 0 International Sheep Genome Consortium MISC \N \N International Sheep Genome Consortium
50712 PO_to_transcript 1 KNOWNXREF 1 PO MISC \N \N Plants Ontology terms attached to transcripts
50713 TAIR_SYMBOL 10 KNOWN 60 TAIR Gene Name PRIMARY_DB_SYNONYM \N \N TAIR gene names
50714 GO_to_transcript 1 KNOWNXREF 1 GO MISC \N \N GO Terms attached to transcripts
50715 TIGR_ID 1 XREF 1 TIGR Internal ID MISC \N \N cross-references to TIGR internal identifiers, attached to genes.
50716 TIGR_TRANSCRIPT_ID 1 XREF 1 TIGR Internal ID MISC \N \N cross-references to TIGR internal identifiers, attached to transcripts
50717 GOA 1 KNOWNXREF 1 GOA MISC \N \N GOA xrefs (to UniProt identifiers)
50718 ENA_GENE 1 KNOWNXREF 1 European Nucleotide Archive MISC \N \N Cross-references to the source gene model when importing from ENA.
50719 ENA_TRANSCRIPT 1 KNOWNXREF 1 European Nucleotide Archive MISC \N \N Cross-references to the source transcript model when importing from ENA.
50720 LGBPratt_EST_Cluster 1 KNOWNXREF 1 LGBPratt_EST_Cluster MISC \N \N \N
50721 BaylorCollege \N KNOWN 5 Baylor College of Medicine, Texas Medical Center MISC \N \N \N
50722 Rhea 1 KNOWNXREF 1 Rhea MISC \N \N Cross-references to Rhea attached to translation objects
50723 Ens_Bt_translation \N XREF 5 Ensembl Cow Translation MISC \N \N \N
50724 RegulonDB_GENE 1 KNOWNXREF 1 RegulonDB MISC \N \N cross-references to RegulonDb attached to gene objects
50725 RegulonDB_OPERON 1 KNOWNXREF 1 RegulonDB MISC \N \N cross-references to RegulonDb attached to operon objects
50726 ENA_FEATURE_GENE 1 KNOWNXREF 1 ENA MISC \N \N Cross-reference to the ENA object from which the gene has been inferred, when loading a genome from ENA records.
50727 ENA_FEATURE_TRANSCRIPT 1 KNOWNXREF 1 ENA MISC \N \N Cross-reference to the ENA object from which the transcript has been inferred, when loading a genome from ENA records.
50728 ENA_FEATURE_PROTEIN 1 KNOWNXREF 1 ENA MISC \N \N Cross-reference to the ENA object from which the translation has been inferred, when loading a genome from ENA records.
50729 RefSeq_import \N KNOWN 240 RefSeq_import MISC \N \N \N
50730 AGP \N KNOWN 5 Anolis Genome Project MISC \N \N \N
50731 Turkey Genome Consortium \N KNOWN 5 Turkey Genome Consortium MISC \N \N Turkey Genome Consortium
50732 Yutaka_Satou_Kyoto_University \N KNOWN 5 Yutaka Satou Kyoto University MISC \N \N Yutaka Satou Kyoto University
50733 Chicken_Genome_Consortium \N KNOWN 5 International Chicken Genome Consortium MISC \N \N \N
50734 TAIR_TRANSLATION 1 XREF 1 TAIR Translation identifiers MISC \N \N TAIR identifiers to link to Ensembl Translation identifiers.\nThe main requirement behind this entry, is to be able to link TAIR GO annotations to Ensembl Translations.
50735 AGI_GENE 1 XREF 1 AGI Gene MISC \N \N annotation provided by Arizona Genome Institute
50736 AGI_TRANSCRIPT 1 XREF 1 AGI Transcript MISC \N \N annotation provided by Arizona Genome Institute
50737 CGNC \N KNOWNXREF 100 CGNC Symbol PRIMARY_DB_SYNONYM \N \N \N
50738 MetaCyc 1 KNOWNXREF 1 MetaCyc MISC \N \N MetaCyc database of metabolic pathways
50739 PHIP 1 KNOWNXREF 1 PHI-base phenotype ontology MISC \N \N PHI-base phenotype ontology for genes proven to affect the outcome of pathogen-host interactions
50740 PHIE 1 KNOWNXREF 1 PHI-base condition ontology MISC \N \N PHI-base experimental evidence ontology for genes proven to affect the outcome of pathogen-host interactions
50741 dbSNP \N XREF 0 dbSNP MISC \N \N dbSNP variant corresponding to Vega 1kG LOF Variant.
50742 PubMedCentral \N KNOWN 5 PubMedCentral LIT \N \N PMC identifier for use with PubMedCentral (http://www.ncbi.nlm.nih.gov/pmc and http://europepmc.org/)
50743 PFAM 27 XREF 0 PFAM MISC \N \N Pfam release 27, from Vega
50744 EntrezGene_trans_name \N KNOWNXREF 250 EntrezGene transcript name MISC \N \N transcript name projected from EntrezGene gene name
50745 BROAD_M_violaceum 1 KNOWNXREF 0 Broad Institute MISC \N \N Broad Institute Microbotryum violaceum Database
50746 BROAD_M_violaceum_GENE 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N Broad Institute Microbotryum violaceum Database
50747 BROAD_M_violaceum_TRANSCRIPT 1 KNOWNXREF 0 Broad Institute PRIMARY_DB_SYNONYM \N \N Broad Institute Microbotryum violaceum Database