data updates for xref mindmap db

misc-scripts/xref_mapping/xref_mindmap/sql/update.sql

+
+LOCK TABLES `external_db_type` WRITE;
+UPDATE external_db_type SET db_type_id = 1 WHERE db_name IN ('MIM','MIM_GENE','MIM_MORBID','DBASS3','DBASS5','Orphanet');
+UPDATE external_db_type SET db_type_id = 2 WHERE db_name IN ('UniGene', 'HPA');
+UPDATE external_db_type SET db_type_id = 3 WHERE db_name IN ('EntrezGene','Uniprot/SPTREMBL','Uniprot/SPTREMBL_predicted','Uniprot/SWISSPROT','Uniprot/SWISSPROT_predicted','Uniprot/Varsplic', 'UniProtKB_all','MEROPS','WikiGene');
+UPDATE external_db_type SET db_type_id = 4 WHERE db_name IN ('HGNC','MGI','ZFIN_ID','HGNC_curated_gene','HGNC_automatic_gene','Clone_based_vega_gene','Clone_based_ensembl_gene','HGNC_curated_transcript','HGNC_automatic_transcript','Clone_based_vega_transcript','Clone_based_ensembl_transcript','MGI_curated_gene','MGI_automatic_gene','MGI_curated_transcript','MGI_automatic_transcript','RFAM_gene_name','miRBase_gene_name','miRBase_transcript_name','RFAM_transcript_name','HGNC_transcript_name','MGI_transcript_name','ZFIN_ID_transcript_name','Uniprot_genename','RefSeq_gene_name');
+UPDATE external_db_type SET db_type_id = 4 WHERE db_name like '%gene\_name' or db_name like '%transcript\_name' or db_name like '%translation\_name' or db_name like '%name\_gene' or  db_name like '%name\_transcript' or db_name like '%name\_translation';  
+UPDATE external_db_type SET db_type_id = 5 WHERE db_name IN ('miRBase','miRBase_predicted','RFAM');
+UPDATE external_db_type SET db_type_id = 6 WHERE db_name IN ('EMBL','EMBL_predicted','protein_id','protein_id_predicted','RefSeq_dna','RefSeq_mRNA','RefSeq_ncRNA','RefSeq_dna_predicted','RefSeq_mRNA_predicted','RefSeq_ncRNA_predicted','RefSeq_peptide','RefSeq_peptide_predicted','RefSeq_rna','RefSeq_rna_predicted','RefSeq_genomic','Vega_gene','Vega_gene_like','Vega_transcript','Vega_transcript_like','Vega_translation','Ens_Hs_gene','Ens_Hs_transcript','Ens_Hs_translation','IPI', 'OTTG','CCDS','OTTT','OTTP','shares_CDS_with','shares_CDS_with_ENST','shares_CDS_with_OTTT','shares_CDS_and_UTR_with_OTTT','ENSG','ENST','ENST_ident','ENST_CDS','UCSC','EMBLBANK_GENE', 'EMBLBANK_TRANSCRIPT','LRG','ENS_LRG_gene','ENS_LRG_transcript');
+UPDATE external_db_type SET db_type_id = 7 WHERE db_name IN ('Interpro','PFAM');
+UPDATE external_db_type SET db_type_id = 8 WHERE db_name IN ('GO','goslim_goa','goslim_generic');
+UPDATE external_db_type SET db_type_id = 9 WHERE db_name IN ('PDB');
+UPDATE external_db_type SET db_type_id = 10 WHERE db_type_id IS NULL;
+UNLOCK TABLES;