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ensembl-gh-mirror
ensembl
Commits
024d79f6
Commit
024d79f6
authored
12 years ago
by
Andy Yates
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Adding processed_pseudogene to our groups
parent
75572022
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modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm
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modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm
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modules/Bio/EnsEMBL/Utils/BiotypeMapper.pm
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View file @
024d79f6
...
...
@@ -131,6 +131,7 @@ my %grouping_of_biotypes = (
'
pseudogene
'
=>
[
qw( pseudogene retrotransposed snRNA_pseudogene tRNA_pseudogene
miRNA_pseudogene Mt_tRNA_pseudogene rRNA_pseudogene
scRNA_pseudogene misc_RNA_pseudogene snoRNA_pseudogene
processed_pseudogene
)
],
'
long_noncoding
'
=>
[
qw( 3prime_overlapping_ncrna antisense lincRNA ncrna_host non_coding
processed_transcript sense_intronic sense_overlapping
...
...
@@ -144,7 +145,7 @@ my %grouping_of_biotypes = (
retrotransposed IG_V_pseudogene TR_V_pseudogene
IG_J_pseudogene IG_C_pseudogene processed_transcript
antisense ambiguous_orf transcribed_processed_pseudogene
disrupted_domain
disrupted_domain
processed_pseudogene
)
],
'
peptide_producing
'
=>
[
qw( protein_coding polymorphic_pseudogene IG_V_gene TR_V_gene
IG_J_gene TR_J_gene IG_D_gene IG_C_gene TR_C_gene
...
...
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