More summary information.

modules/Bio/EnsEMBL/Pipeline/FASTA/EmailSummary.pm

@@ -14,7 +14,7 @@ sub fetch_input {
   my $blast_gene = $self->jobs('BlastGeneIndex');
   my $blast_pep = $self->jobs('BlastPepIndex');
   my $blat = $self->jobs('BlatDNAIndex', 100);
-#  my $blat_sm = $self->jobs('BlatSmDNAIndex', 100);
+  my $blat_sm = $self->jobs('BlatSmDNAIndex', 100);
     
   my @args = (
     $dump_dna->{successful_jobs},
@@ -31,8 +31,8 @@ sub fetch_input {
     $blast_pep->{failed_jobs},
     $blat->{successful_jobs},
     $blat->{failed_jobs},
-#    $blat_sm->{successful_jobs},
-#    $blat_sm->{failed_jobs},
+    $blat_sm->{successful_jobs},
+    $blat_sm->{failed_jobs},
     $self->failed(),
     $self->summary($dump_dna),
     $self->summary($copy_dna),
@@ -41,7 +41,7 @@ sub fetch_input {
     $self->summary($blast_gene),
     $self->summary($blast_pep),
     $self->summary($blat),
-#    $self->summary($blat_sm),
+    $self->summary($blat_sm),
   );
   
   my $msg = sprintf(<<'MSG', @args);
@@ -54,7 +54,7 @@ Your FASTA Pipeline has finished. We have:
   * %d species with BLAST GENE indexes generated (%d failed)
   * %d species with BLAST PEPTIDE indexes generated (%d failed)
   * %d species with BLAT DNA generated (%d failed)
-  * d species with BLAT SM DNA generated (d failed)
+  * %d species with BLAT SM DNA generated (d failed)
 
 %s
 
@@ -76,7 +76,7 @@ Full breakdown follows ...
 
 %s
 
-s
+%s
 
 MSG
   $self->param('text', $msg);
@@ -126,7 +126,7 @@ sub failed {
     return 'No jobs failed. Congratulations!';
   }
   my $output = <<'MSG';
-The following jobs have failed during this run. Please check:
+The following jobs have failed during this run. Please check your hive's error msg table for the following jobs:
 
 MSG
   foreach my $job (@{$failed}) {