Add 'HAP' to the list of types of patches to project so that the haplotypes...

Add 'HAP' to the list of types of patches to project so that the haplotypes sequence mappings and karyotype bands won't be missed again.

misc-scripts/assembly_patches/run_patch_mapping.pl

@@ -18,7 +18,7 @@ my $user         = '';
 my $pass         = '';
 my $port         = '';
 my $dbname       = '';
-my @patch_types = ('PATCH_FIX','PATCH_NOVEL');
+my @patch_types = ('PATCH_FIX','PATCH_NOVEL','HAP');
 my $align_by_component;
 my $align_non_ident;
 my $fix_overlap;