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ensembl-gh-mirror
ensembl
Commits
0f2978c5
Commit
0f2978c5
authored
Feb 05, 2008
by
Andreas Kusalananda Kähäri
Browse files
The binning methods 'frational_count' and 'weight' are the same.
parent
cd2e79ad
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modules/Bio/EnsEMBL/Collection.pm
modules/Bio/EnsEMBL/Collection.pm
+3
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modules/Bio/EnsEMBL/Collection.pm
View file @
0f2978c5
...
...
@@ -190,7 +190,7 @@ Returns an array of bins, each bin containing an array of entries
method) allocated to that bin. The 'entry' binning method is equivalent
to 'entries'.
=item 'fractional_count' and '
fcoun
t'
=item 'fractional_count' and '
weigh
t'
Returns an array of bins, each bin containing the sum of the fractions
of features overlapping that bin. A feature fully inside a bin will
...
...
@@ -257,7 +257,7 @@ our %VALID_BINNING_METHODS = (
'
entries
'
=>
2
,
'
entry
'
=>
2
,
# Same as 'entries'.
'
fractional_count
'
=>
3
,
'
fcoun
t
'
=>
3
,
# Same as 'fractional_count'.
'
weigh
t
'
=>
3
,
# Same as 'fractional_count'.
'
coverage
'
=>
4
);
=head1 METHODS (constructor)
...
...
@@ -771,7 +771,7 @@ sub get_bins {
}
elsif
(
$method
==
3
)
{
# For 'fractional_count' and '
fcoun
t'.
# For 'fractional_count' and '
weigh
t'.
if
(
$start_bin
==
$end_bin
)
{
++
$bins
[
$start_bin
];
...
...
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