1 chimp_gap_genes Pan troglodytes genes modelled from the projection of human genes using WGA2Genes code.
1 chimp_genes Pan troglodytes genes modelled from exonerate human genes in regions where no projection was obtained. Model obtained using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 chimp_human_protein Human protein sequence aligned to the chimp genome by projection or by using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 chimp_est Pan troglodytes ESTs from dbEST aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 chimp_protein Pan troglodyes protein sequences from Swiss-Prot/TrEMBL and RefSeq aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95)
1 cint_cdna Ciona intestinalis full insert sequences of cDNA clones from Ghost Database (http://ghost.zool.kyoto-u.ac.jp/indexr1.html) aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 cint_est Ciona intestinalis ESTs from dbEST and GHOST aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
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@@ -178,6 +177,7 @@
1 other_protein Uniprot proteins aligned to the genome with GeneWise (E.Birney et al., Genome Res. 2004 14:988-95)
1 other_proteins Uniprot proteins aligned to the genome with GeneWise (E.Birney et al., Genome Res. 2004 14:988-95)
1 pfscan Hits to the PROSITE profiles database (protein family/domain models based on weight matrices; N. Hulu et al., Nuc. Acids. Res. 2004 32:D134-7). Part of the Interpro consortium (http://www.ebi.ac.uk/interpro/)
1 pmatch Richard Durbin's very fast identical protein search tool used as part of the EnsEMBL genome annotation pipeline. It is unpublished software, available from the Sanger Centre CVS.
1 protein_binding_site Feature imported from FlyBase (http://www.flybase.org)
1 protein_exonerate Proteins are mapped on the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 qtl Quantitative Trait Loci (QTL) features.
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@@ -213,7 +213,6 @@
1 platypus_cdna Platypus cDNAs from RefSeq and EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 platypus_est Platypus ESTs from EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 platypus_protein Platypus proteins from Swiss-Prot/TrEMBL aligned to the genome using GeneWise (E. Birney et al., Genome Res. 2004 14:988-95)
1 oxford_FGU Gene predictions generated by Chris Pointing's group at the FGU in Oxford using exonerate
1 platypus_454_cdna Platypus cDNAs assembly from 454 reads aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 horse_cdna Horse cDNAs from RefSeq and EMBL aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
1 horse_est Horse ESTs from dbEST aligned to the genome using Exonerate (G. Slater et al., BMC Bioinformatics. 2005 6:31)
