Skip to content
GitLab
Explore
Sign in
Primary navigation
Search or go to…
Project
E
ensembl
Manage
Activity
Members
Labels
Plan
Issues
0
Issue boards
Milestones
Iterations
Wiki
Requirements
Jira
Code
Merge requests
1
Repository
Branches
Commits
Tags
Repository graph
Compare revisions
Snippets
Locked files
Build
Pipelines
Jobs
Pipeline schedules
Test cases
Artifacts
Deploy
Releases
Package Registry
Container Registry
Operate
Environments
Terraform modules
Monitor
Incidents
Service Desk
Analyze
Value stream analytics
Contributor analytics
CI/CD analytics
Repository analytics
Code review analytics
Issue analytics
Insights
Help
Help
Support
GitLab documentation
Compare GitLab plans
Community forum
Contribute to GitLab
Provide feedback
Terms and privacy
Keyboard shortcuts
?
Snippets
Groups
Projects
Show more breadcrumbs
ensembl-gh-mirror
ensembl
Commits
1ec81a39
Commit
1ec81a39
authored
13 years ago
by
Monika Komorowska
Browse files
Options
Downloads
Patches
Plain Diff
added examples of commmands to ontlogy database creation instructions
parent
13db4093
No related branches found
Branches containing commit
No related tags found
Tags containing commit
No related merge requests found
Changes
1
Hide whitespace changes
Inline
Side-by-side
Showing
1 changed file
misc-scripts/ontology/README
+2
-5
2 additions, 5 deletions
misc-scripts/ontology/README
with
2 additions
and
5 deletions
misc-scripts/ontology/README
+
2
−
5
View file @
1ec81a39
...
...
@@ -229,14 +229,11 @@
CREATING THE ONTOLOGY DATABASE
--------------------------------------------------------------------
Create the database on ens-staging1 and copy to ens-staging2 using
ensembl/misc-srcipts/CopyDBOverServer.pl script.
To create the ensembl_ontology_NN database for a release, the
following steps needs to be followed:
1. Create the empty database by doing "CREATE DATABASE
ensembl_ontology_NN" (where 'NN' is the current release).
ensembl_ontology_NN" (where 'NN' is the current release)
on ens-staging1
.
2. Load the schema from 'tables.sql' located in
ensembl/misc-scripts/ontology/sql/
...
...
@@ -270,7 +267,7 @@
e.g.: perl add_subset_maps.pl -h ens-staging1 -u ensadmin -p ensembl -d ensembl_ontology_67
8.
Done
.
8.
Copy the newly created database to ens-staging2 using ensembl/misc-srcipts/CopyDBOverServer.pl script
.
$Id$
This diff is collapsed.
Click to expand it.
Preview
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Save comment
Cancel
Please
register
or
sign in
to comment