Commit 2131d21a authored by Magali Ruffier's avatar Magali Ruffier
Browse files

removed 3 lines of commented out code

replaced reg with registry for more explicit code
parent 7cb1a222
......@@ -64,7 +64,7 @@ use Bio::EnsEMBL::Utils::Argument qw(rearrange);
use Bio::EnsEMBL::Registry;
use Bio::EnsEMBL::Utils::ConfigRegistry;
my $reg = "Bio::EnsEMBL::Registry";
my $registry = "Bio::EnsEMBL::Registry";
=head2 new
......@@ -147,10 +147,6 @@ sub new {
$self = Bio::EnsEMBL::Utils::ConfigRegistry::gen_load($self);
# if(!defined($species) ){
# $reg->find_and_add_aliases($self);
# }
$self->species_id( $species_id || 1 );
$self->is_multispecies( defined($is_multispecies)
......@@ -555,7 +551,7 @@ sub add_ExternalFeatureFactory{
sub get_adaptor {
my ($self, $canonical_name, @other_args) = @_;
return $reg->get_adaptor($self->species(),$self->group(),$canonical_name);
return $registry->get_adaptor($self->species(),$self->group(),$canonical_name);
}
......@@ -580,7 +576,7 @@ sub get_adaptor {
sub set_adaptor {
my ($self, $canonical_name, $module) = @_;
$reg->add_adaptor($self->species(),$self->group(),$canonical_name,$module);
$registry->add_adaptor($self->species(),$self->group(),$canonical_name,$module);
return $module;
}
......@@ -895,11 +891,11 @@ sub dnadb {
if(@_) {
my $arg = shift;
$reg->add_DNAAdaptor($self->species(),$self->group(),$arg->species(),$arg->group());
$registry->add_DNAAdaptor($self->species(),$self->group(),$arg->species(),$arg->group());
}
# return $self->{'dnadb'} || $self;
return $reg->get_DNAAdaptor($self->species(),$self->group()) || $self;
return $registry->get_DNAAdaptor($self->species(),$self->group()) || $self;
}
......@@ -917,7 +913,7 @@ sub AUTOLOAD {
throw( sprintf( "Could not work out type for %s\n", $AUTOLOAD ) );
}
my $ret = $reg->get_adaptor( $self->species(), $self->group(), $type );
my $ret = $registry->get_adaptor( $self->species(), $self->group(), $type );
return $ret if $ret;
......
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