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Commit 25d9b4fd authored by Monika Komorowska's avatar Monika Komorowska
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Deleted data for dbprimary_acc_linkable.

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modules/t/test-genome-DBs/homo_sapiens/core/external_db.txt
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210 Anopheles_symbol 1 KNOWN 1 50 Anopheles symbol MISC \N \N \N
300 BRIGGSAE_HYBRID 1 KNOWNXREF 1 5 Briggsae Hybrid MISC \N \N \N
400 Celera_Gene 1 PRED 1 5 Celera gene MISC \N \N \N
410 Celera_Pep 1 PRED 1 5 Celera pep MISC \N \N \N
420 Celera_Trans 1 PRED 1 5 Celera trans MISC \N \N \N
600 DROS_ORTH 1 ORTH 1 5 DROS ORTH MISC \N \N \N
2 EMBL 1 KNOWNXREF 1 5 EMBL MISC \N \N \N
800 flybase_gene_id 1 KNOWNXREF 1 5 Flybase Gene MISC \N \N \N
801 flybase_translation_id 1 KNOWNXREF 1 5 Flybase translation ID MISC \N \N \N
802 flybase_gff 1 KNOWNXREF 1 5 Flybase GFF MISC \N \N \N
803 flybase_polypeptide_id 1 KNOWNXREF 1 5 Flybase Polypeptide ID MISC \N \N \N
804 flybase_annotation_id 1 KNOWNXREF 1 5 Flybase Annotation ID MISC \N \N \N
805 flybase_symbol 1 KNOWNXREF 1 50 Flybase Symbol MISC \N \N \N
806 flybase_synonym 1 KNOWNXREF 1 5 Flybase Synonym MISC \N \N \N
807 flybase_name 1 KNOWNXREF 1 5 Flybase Name MISC \N \N \N
808 flybase_transcript_id 1 KNOWNXREF 1 5 Flybase transcript ID MISC \N \N \N
810 gadfly_gene_cgid 1 KNOWNXREF 1 10 Gadfly gene CGID MISC \N \N \N
811 gadfly_transcript_cgid 1 KNOWNXREF 1 10 Gadfly transcript CGID MISC \N \N \N
812 gadfly_translation_cgid 1 KNOWNXREF 1 10 Gadfly translation CGID MISC \N \N \N
821 FlyBaseName_gene 1 KNOWNXREF 1 5 FlyBaseName gene MISC \N \N \N
824 FlyBaseName_translations 1 XREF 1 5 FlyBaseName translations MISC \N \N \N
825 FlyBaseName_transcript 1 XREF 1 50 FlyBaseName transcript MISC \N \N \N
900 GKB 1 XREF 1 5 GKB MISC \N \N \N
6 GO 1 KNOWNXREF 1 5 GO MISC \N \N \N
5 HUGO 1 KNOWNXREF 0 100 HUGO MISC \N \N \N
11 Interpro 1 XREF 1 5 Interpro MISC \N \N Test interpro desc2
10 EntrezGene 1 KNOWNXREF 1 10 EntrezGene ARRAY \N \N \N
1400 MarkerSymbol 1 KNOWNXREF 1 50 MarkerSymbol MISC \N \N \N
4 MIM 1 KNOWNXREF 1 5 MIM MISC \N \N \N
8 PDB 1 KNOWNXREF 1 5 PDB MISC \N \N \N
3 protein_id 1 KNOWNXREF 1 5 Protein ID ALT_TRANS \N \N \N
9 RefSeq_dna 1 KNOWN 1 25 RefSeq DNA MISC \N \N \N
1805 RefSeq_dna_predicted 1 PRED 1 15 RefSeq DNA predicted MISC \N \N \N
1810 RefSeq_peptide 1 KNOWN 1 26 RefSeq peptide MISC \N \N \N
1815 RefSeq_peptide_predicted 1 PRED 1 16 RefSeq peptide predicted MISC \N \N \N
1900 Sanger_Hver1_2_1 1 XREF 1 5 Sanger Hver 121 MISC \N \N \N
1901 Sanger_Hver1_3_1 1 XREF 1 5 Sanger Hver 131 MISC \N \N \N
1902 SNGR_Hver 1 XREF 1 5 Sanger Hver MISC \N \N \N
1910 Sanger_Mver1_1_1 1 XREF 1 5 Sanger Hver 111 MISC \N \N \N
7 Uniprot/SPTREMBL 1 KNOWN 1 20 UniProt/TrEMBL MISC \N \N \N
2010 prediction_SPTREMBL 1 XREF 1 10 Prediction SpTREMBL MISC \N \N \N
2100 Superfamily 1 KNOWNXREF 1 5 Superfamily MISC \N \N \N
1 Uniprot/SWISSPROT 1 KNOWN 1 30 UniProt/Swiss-Prot MISC \N \N \N
2300 Vega_gene 1 XREF 1 5 Vega gene MISC \N \N \N
2310 Vega_transcript 1 XREF 1 5 Vega transcript MISC \N \N \N
2320 Vega_translation 1 XREF 1 5 Vega translation MISC \N \N \N
2400 wormbase_gene 1 KNOWN 1 5 Wormbase Gene MISC \N \N \N
2410 wormbase_transcript 1 KNOWN 1 5 Wormbase Transcript MISC \N \N \N
2420 wormpep_id 1 KNOWN 1 5 Wormpep ID MISC \N \N \N
2430 wormbase_pseudogene 1 PSEUDO 1 5 Wormbase Pseudogene MISC \N \N \N
2510 ZFIN_ID 1 KNOWNXREF 1 5 ZFIN ID MISC \N \N \N
2600 GeneDB 1 KNOWN 1 5 GeneDB MISC \N \N \N
2601 ciona_int_jgi_proteins_v1 1 KNOWN 1 5 Ciona V1 MISC \N \N \N
2700 Ens_Hs_gene 1 XREF 1 5 Ensembl Human Gene MISC \N \N \N
2710 Ens_Hs_transcript 1 XREF 1 5 Ensembl Human Transcript MISC \N \N \N
2720 Ens_Hs_translation 1 XREF 1 5 Ensembl Human Translation MISC \N \N \N
2800 RGD 1 XREF 1 50 RGD MISC \N \N \N
2900 Genoscope_pred_gene 1 XREF 1 38 Genoscope pred gene MISC \N \N \N
2910 Genoscope_pred_transcript 1 XREF 1 39 Genoscope pred transcript MISC \N \N \N
2920 Genoscope_annotated_gene 1 KNOWN 1 40 Genoscope annotated gene MISC \N \N \N
3001 AFFY_MG_U74_all 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N
3002 AFFY_MG_U74A 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N
3003 AFFY_MG_U74Av2 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N
3004 AFFY_MG_U74B 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N
3005 AFFY_MG_U74Bv2 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N
3006 AFFY_MG_U74C 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N
3007 AFFY_MG_U74Cv2 1 XREF 1 1 Affymx Microarray U74 ARRAY \N \N \N
3008 AFFY_MOE430_all 1 XREF 1 1 Affymx Microarray OE430 ARRAY \N \N \N
3009 AFFY_MOE430A 1 XREF 1 1 Affymx Microarray MOE430 ARRAY \N \N \N
3010 AFFY_MOE430B 1 XREF 1 1 Affymx Microarray MOE430 ARRAY \N \N \N
3011 AFFY_Mu11Ksub_all 1 XREF 1 1 Affymx Microarray Mu11 ARRAY \N \N \N
3012 AFFY_Mu11KsubA 1 XREF 1 1 Affymx Microarray Mu11 ARRAY \N \N \N
3013 AFFY_Mu11KsubB 1 XREF 1 1 Affymx Microarray Mu11 ARRAY \N \N \N
3014 AFFY_Mouse430_2 1 XREF 1 1 Affymx Microarray Mouse430 ARRAY \N \N \N
3015 AFFY_Mouse430A_2 1 XREF 1 1 Affymx Microarray Mouse430 ARRAY \N \N \N
3051 AFFY_RAE230_all 1 XREF 1 1 Affymx Microarray RAE230 ARRAY \N \N \N
3052 AFFY_RAE230A 1 XREF 1 1 Affymx Microarray RAE230 ARRAY \N \N \N
3053 AFFY_RAE230B 1 XREF 1 1 Affymx Microarray RAE230 ARRAY \N \N \N
3054 AFFY_RG_U34_all 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N
3055 AFFY_RG_U34A 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N
3056 AFFY_RG_U34B 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N
3057 AFFY_RG_U34C 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N
3058 AFFY_RN_U34 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N
3059 AFFY_RT_U34 1 XREF 1 1 Affymx Microarray U34 ARRAY \N \N \N
3101 AFFY_HG_U133_all 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N
3102 AFFY_HG_U133A 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N
3103 AFFY_HG_U133B 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N
3104 AFFY_HG_U95_all 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N
3105 AFFY_HG_U95A 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N
3106 AFFY_HG_U95Av2 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N
3107 AFFY_HG_U95B 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N
3108 AFFY_HG_U95C 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N
3109 AFFY_HG_U95D 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N
3110 AFFY_HG_U95E 1 XREF 1 1 Affymx Microarray U95 ARRAY \N \N \N
3111 AFFY_HG_U133_PLUS_2 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N
3112 AFFY_HG_U133A_2 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N
3113 AFFY_HG_Focus 1 XREF 1 1 Affymx Microarray Focus ARRAY \N \N \N
3114 AFFY_Rat230_2 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N
3115 AFFY_Zebrafish 1 XREF 1 1 Affymx Microarray Zebrafish ARRAY \N \N \N
3116 AFFY_U133_X3P 1 XREF 1 1 Affymx Microarray U133 ARRAY \N \N \N
3117 AFFY_Canine 1 XREF 1 1 Affymx Microarray Canine ARRAY \N \N \N
3118 AFFY_Chicken 1 XREF 1 1 Affymx Microarray Chicken ARRAY \N \N \N
3300 miRNA_Registry 1 XREF 1 1 miRNA Registry MISC \N \N \N
3400 SGD 1 KNOWN 1 50 SGD MISC \N \N \N
3500 IPI 1 KNOWN 1 5 IPI MISC \N \N \N
3800 CCDS 1 KNOWN 1 50 CCDS MISC \N \N \N
3900 PUBMED 1 KNOWN 1 5 Sequence Publications LIT \N \N \N
4000 MEDLINE 1 KNOWN 1 5 MEDLINE LIT \N \N \N
4100 UniGene 1 KNOWN 1 5 UniGene MISC \N \N \N
4200 RFAM 1 XREF 1 5 RFAM MISC \N \N \N
210 Anopheles_symbol 1 KNOWN 50 Anopheles symbol MISC \N \N \N
300 BRIGGSAE_HYBRID 1 KNOWNXREF 5 Briggsae Hybrid MISC \N \N \N
400 Celera_Gene 1 PRED 5 Celera gene MISC \N \N \N
410 Celera_Pep 1 PRED 5 Celera pep MISC \N \N \N
420 Celera_Trans 1 PRED 5 Celera trans MISC \N \N \N
600 DROS_ORTH 1 ORTH 5 DROS ORTH MISC \N \N \N
2 EMBL 1 KNOWNXREF 5 EMBL MISC \N \N \N
800 flybase_gene_id 1 KNOWNXREF 5 Flybase Gene MISC \N \N \N
801 flybase_translation_id 1 KNOWNXREF 5 Flybase translation ID MISC \N \N \N
802 flybase_gff 1 KNOWNXREF 5 Flybase GFF MISC \N \N \N
803 flybase_polypeptide_id 1 KNOWNXREF 5 Flybase Polypeptide ID MISC \N \N \N
804 flybase_annotation_id 1 KNOWNXREF 5 Flybase Annotation ID MISC \N \N \N
805 flybase_symbol 1 KNOWNXREF 50 Flybase Symbol MISC \N \N \N
806 flybase_synonym 1 KNOWNXREF 5 Flybase Synonym MISC \N \N \N
807 flybase_name 1 KNOWNXREF 5 Flybase Name MISC \N \N \N
808 flybase_transcript_id 1 KNOWNXREF 5 Flybase transcript ID MISC \N \N \N
810 gadfly_gene_cgid 1 KNOWNXREF 10 Gadfly gene CGID MISC \N \N \N
811 gadfly_transcript_cgid 1 KNOWNXREF 10 Gadfly transcript CGID MISC \N \N \N
812 gadfly_translation_cgid 1 KNOWNXREF 10 Gadfly translation CGID MISC \N \N \N
821 FlyBaseName_gene 1 KNOWNXREF 5 FlyBaseName gene MISC \N \N \N
824 FlyBaseName_translations 1 XREF 5 FlyBaseName translations MISC \N \N \N
825 FlyBaseName_transcript 1 XREF 50 FlyBaseName transcript MISC \N \N \N
900 GKB 1 XREF 5 GKB MISC \N \N \N
6 GO 1 KNOWNXREF 5 GO MISC \N \N \N
5 HUGO 1 KNOWNXREF 100 HUGO MISC \N \N \N
11 Interpro 1 XREF 5 Interpro MISC \N \N Test interpro desc2
10 EntrezGene 1 KNOWNXREF 10 EntrezGene ARRAY \N \N \N
1400 MarkerSymbol 1 KNOWNXREF 50 MarkerSymbol MISC \N \N \N
4 MIM 1 KNOWNXREF 5 MIM MISC \N \N \N
8 PDB 1 KNOWNXREF 5 PDB MISC \N \N \N
3 protein_id 1 KNOWNXREF 5 Protein ID ALT_TRANS \N \N \N
9 RefSeq_dna 1 KNOWN 25 RefSeq DNA MISC \N \N \N
1805 RefSeq_dna_predicted 1 PRED 15 RefSeq DNA predicted MISC \N \N \N
1810 RefSeq_peptide 1 KNOWN 26 RefSeq peptide MISC \N \N \N
1815 RefSeq_peptide_predicted 1 PRED 16 RefSeq peptide predicted MISC \N \N \N
1900 Sanger_Hver1_2_1 1 XREF 5 Sanger Hver 121 MISC \N \N \N
1901 Sanger_Hver1_3_1 1 XREF 5 Sanger Hver 131 MISC \N \N \N
1902 SNGR_Hver 1 XREF 5 Sanger Hver MISC \N \N \N
1910 Sanger_Mver1_1_1 1 XREF 5 Sanger Hver 111 MISC \N \N \N
7 Uniprot/SPTREMBL 1 KNOWN 20 UniProt/TrEMBL MISC \N \N \N
2010 prediction_SPTREMBL 1 XREF 10 Prediction SpTREMBL MISC \N \N \N
2100 Superfamily 1 KNOWNXREF 5 Superfamily MISC \N \N \N
1 Uniprot/SWISSPROT 1 KNOWN 30 UniProt/Swiss-Prot MISC \N \N \N
2300 Vega_gene 1 XREF 5 Vega gene MISC \N \N \N
2310 Vega_transcript 1 XREF 5 Vega transcript MISC \N \N \N
2320 Vega_translation 1 XREF 5 Vega translation MISC \N \N \N
2400 wormbase_gene 1 KNOWN 5 Wormbase Gene MISC \N \N \N
2410 wormbase_transcript 1 KNOWN 5 Wormbase Transcript MISC \N \N \N
2420 wormpep_id 1 KNOWN 5 Wormpep ID MISC \N \N \N
2430 wormbase_pseudogene 1 PSEUDO 5 Wormbase Pseudogene MISC \N \N \N
2510 ZFIN_ID 1 KNOWNXREF 5 ZFIN ID MISC \N \N \N
2600 GeneDB 1 KNOWN 5 GeneDB MISC \N \N \N
2601 ciona_int_jgi_proteins_v1 1 KNOWN 5 Ciona V1 MISC \N \N \N
2700 Ens_Hs_gene 1 XREF 5 Ensembl Human Gene MISC \N \N \N
2710 Ens_Hs_transcript 1 XREF 5 Ensembl Human Transcript MISC \N \N \N
2720 Ens_Hs_translation 1 XREF 5 Ensembl Human Translation MISC \N \N \N
2800 RGD 1 XREF 50 RGD MISC \N \N \N
2900 Genoscope_pred_gene 1 XREF 38 Genoscope pred gene MISC \N \N \N
2910 Genoscope_pred_transcript 1 XREF 39 Genoscope pred transcript MISC \N \N \N
2920 Genoscope_annotated_gene 1 KNOWN 40 Genoscope annotated gene MISC \N \N \N
3001 AFFY_MG_U74_all 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N
3002 AFFY_MG_U74A 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N
3003 AFFY_MG_U74Av2 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N
3004 AFFY_MG_U74B 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N
3005 AFFY_MG_U74Bv2 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N
3006 AFFY_MG_U74C 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N
3007 AFFY_MG_U74Cv2 1 XREF 1 Affymx Microarray U74 ARRAY \N \N \N
3008 AFFY_MOE430_all 1 XREF 1 Affymx Microarray OE430 ARRAY \N \N \N
3009 AFFY_MOE430A 1 XREF 1 Affymx Microarray MOE430 ARRAY \N \N \N
3010 AFFY_MOE430B 1 XREF 1 Affymx Microarray MOE430 ARRAY \N \N \N
3011 AFFY_Mu11Ksub_all 1 XREF 1 Affymx Microarray Mu11 ARRAY \N \N \N
3012 AFFY_Mu11KsubA 1 XREF 1 Affymx Microarray Mu11 ARRAY \N \N \N
3013 AFFY_Mu11KsubB 1 XREF 1 Affymx Microarray Mu11 ARRAY \N \N \N
3014 AFFY_Mouse430_2 1 XREF 1 Affymx Microarray Mouse430 ARRAY \N \N \N
3015 AFFY_Mouse430A_2 1 XREF 1 Affymx Microarray Mouse430 ARRAY \N \N \N
3051 AFFY_RAE230_all 1 XREF 1 Affymx Microarray RAE230 ARRAY \N \N \N
3052 AFFY_RAE230A 1 XREF 1 Affymx Microarray RAE230 ARRAY \N \N \N
3053 AFFY_RAE230B 1 XREF 1 Affymx Microarray RAE230 ARRAY \N \N \N
3054 AFFY_RG_U34_all 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N
3055 AFFY_RG_U34A 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N
3056 AFFY_RG_U34B 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N
3057 AFFY_RG_U34C 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N
3058 AFFY_RN_U34 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N
3059 AFFY_RT_U34 1 XREF 1 Affymx Microarray U34 ARRAY \N \N \N
3101 AFFY_HG_U133_all 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N
3102 AFFY_HG_U133A 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N
3103 AFFY_HG_U133B 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N
3104 AFFY_HG_U95_all 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N
3105 AFFY_HG_U95A 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N
3106 AFFY_HG_U95Av2 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N
3107 AFFY_HG_U95B 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N
3108 AFFY_HG_U95C 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N
3109 AFFY_HG_U95D 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N
3110 AFFY_HG_U95E 1 XREF 1 Affymx Microarray U95 ARRAY \N \N \N
3111 AFFY_HG_U133_PLUS_2 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N
3112 AFFY_HG_U133A_2 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N
3113 AFFY_HG_Focus 1 XREF 1 Affymx Microarray Focus ARRAY \N \N \N
3114 AFFY_Rat230_2 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N
3115 AFFY_Zebrafish 1 XREF 1 Affymx Microarray Zebrafish ARRAY \N \N \N
3116 AFFY_U133_X3P 1 XREF 1 Affymx Microarray U133 ARRAY \N \N \N
3117 AFFY_Canine 1 XREF 1 Affymx Microarray Canine ARRAY \N \N \N
3118 AFFY_Chicken 1 XREF 1 Affymx Microarray Chicken ARRAY \N \N \N
3300 miRNA_Registry 1 XREF 1 miRNA Registry MISC \N \N \N
3400 SGD 1 KNOWN 50 SGD MISC \N \N \N
3500 IPI 1 KNOWN 5 IPI MISC \N \N \N
3800 CCDS 1 KNOWN 50 CCDS MISC \N \N \N
3900 PUBMED 1 KNOWN 5 Sequence Publications LIT \N \N \N
4000 MEDLINE 1 KNOWN 5 MEDLINE LIT \N \N \N
4100 UniGene 1 KNOWN 5 UniGene MISC \N \N \N
4200 RFAM 1 XREF 5 RFAM MISC \N \N \N
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