new EBI server settings

misc-scripts/xref_mapping/xref_config.ini

@@ -784,7 +784,7 @@ priority        = 1
 prio_descr      =
 parser          = CCDSParser
 release_uri     =
-data_uri        = script:host=>ens-livemirror,dbname=>ccds_human_85,tran_name=>ENST,
+data_uri        = script:host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_human_88,port=>4531,tran_name=>ENST,
 
 [source CCDS::mus_musculus]
 # Used by mus_musculus
@@ -795,7 +795,7 @@ priority        = 1
 prio_descr      =
 parser          = CCDSParser
 release_uri     =
-data_uri        = script:host=>ens-livemirror,dbname=>ccds_mouse_85,tran_name=>ENSMUST,
+data_uri        = script:host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_mouse_88,port=>4531,tran_name=>ENSMUST,
 
 [source Celera_Pep::anopheles_gambiae]
 # Used by anopheles_gambiae
@@ -1126,7 +1126,7 @@ priority        = 2
 prio_descr      = ccds
 parser          = HGNC_CCDSParser
 release_uri     =
-data_uri        = script:wget=>http://www.genenames.org/cgi-bin/download?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,host=>ens-livemirror,dbname=>ccds_human_85,
+data_uri        = script:wget=>http://www.genenames.org/cgi-bin/download?title=HGNC+output+data&hgnc_dbtag=on&col=gd_hgnc_id&col=gd_status&col=gd_ccds_ids&status=Approved&status_opt=2&level=pri&=on&where=&order_by=gd_app_sym_sort&limit=&format=text&submit=submit&.cgifields=&.cgifields=level&.cgifields=chr&.cgifields=status&.cgifields=hgnc_dbtag,host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_human_88,port=>4531,tran_name=>ENST,
 
 
 [source HGNC::homo_sapiens#07]
@@ -1149,7 +1149,7 @@ priority        = 3
 prio_descr      = vega
 parser          = VegaOfficialNameParser
 release_uri     =
-data_uri        = script:source=>HGNC,host=>ens-staging1,
+data_uri        = script:source=>HGNC,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>HGNC,chost=>ens-production,cdbname=>mr6_human_core,vdbhost=>ens-production,vdbname=>mr6_human_vega,
 
 
@@ -1419,7 +1419,7 @@ priority        = 2
 prio_descr      = vega
 parser          = VegaOfficialNameParser
 release_uri     =
-data_uri        = script:source=>MGI,host=>ens-staging2,
+data_uri        = script:source=>MGI,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>MGI,chost=>ens-production,cdbname=>mr6_mouse_core,vhost=>ens-production,vdbname=>mr6_mouse_vega,
 
 [source MGI::mus_musculus#05]
@@ -1558,7 +1558,7 @@ priority        = 3
 prio_descr      = vega
 parser          = VegaOfficialNameParser
 release_uri     =
-data_uri        = script:source=>RGD,host=>ens-staging2,
+data_uri        = script:source=>RGD,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>RGD,chost=>genebuild3,cdbname=>db8_rattus_norvegicus_core_77_5,vhost=>genebuild6,vdbname=>db8_rat_vega_77,
 
 [source RGD_trans_name]
@@ -1578,7 +1578,7 @@ priority        = 1
 prio_descr      =
 parser          = curated_transcriptParser
 release_uri     =
-data_uri        = script:source=>RGD,host=>ens-staging2,
+data_uri        = script:source=>RGD,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>RGD,chost=>ens-staging2,cdbname=>rattus_norvegicus_core_77_5,vdbname=>db8_rat_vega_77,vhost=>genebuild6,
 
 [source RefSeq_dna::MULTI-fungi]
@@ -2234,7 +2234,7 @@ priority        = 2
 prio_descr      = ccds
 parser          = RefSeq_CCDSParser
 release_uri     =
-data_uri        = script:host=>ens-livemirror,dbname=>ccds_human_85,
+data_uri        = script:host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_human_88,port=>4531,tran_name=>ENST,
 
 [source RefSeq_dna::homo_sapiens#01]
 # Used by homo_sapiens
@@ -2280,7 +2280,7 @@ priority        = 2
 prio_descr      = ccds
 parser          = RefSeq_CCDSParser
 release_uri     =
-data_uri        = script:host=>ens-livemirror,dbname=>ccds_mouse_85,
+data_uri        = script:host=>mysql-ens-genebuild-prod-5,dbname=>rishi_ccds_mouse_88,port=>4531,tran_name=>ENSMUST,
 
 
 [source RefSeq_dna::pan_troglodytes]
@@ -3941,7 +3941,7 @@ priority        = 1
 prio_descr      = curated with transcript number postfix
 parser          = curated_transcriptParser
 release_uri     =
-data_uri        = script:source=>HGNC,host=>ens-staging1,
+data_uri        = script:source=>HGNC,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>HGNC,chost=>ens-production,cdbname=>mr6_human_core,vdbname=>mr6_human_vega,vhost=>ens-production,
 
 [source PIGGY_curated_transcript::sus_scrofa]
@@ -3952,7 +3952,7 @@ priority        = 1
 prio_descr      = curated with transcript number postfix
 parser          = curated_transcriptParser
 release_uri     =
-data_uri        = script:source=>PIGGY,host=>ens-staging2,
+data_uri        = script:source=>PIGGY,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>PIGGY,chost=>ens-production,cdbname=>mr6_pig_core,vdbname=>mr6_pig_vega,vhost=>ens-production,
 
 [source PIGGY::sus_scrofa]
@@ -3964,7 +3964,7 @@ priority        = 1
 prio_descr      = vega
 parser          = VegaOfficialNameParser
 release_uri     =
-data_uri        = script:host=>ens-staging2,source=>PIGGY,
+data_uri        = script:host=>mysql-ens-sta-1,port=>4519,
 
 [source PIGGY_trans_name]
 name            = PIGGY_trans_name
@@ -4019,7 +4019,7 @@ priority        = 1
 prio_descr      =
 parser          = curated_transcriptParser
 release_uri     =
-data_uri        = script:source=>MGI,host=>ens-staging2,
+data_uri        = script:source=>MGI,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>MGI,chost=>ens-production,cdbname=>mr6_mouse_core,vdbname=>mr6_pig_vega,vhost=>ens-production,
 
 
@@ -4127,7 +4127,7 @@ priority        = 2
 prio_descr      = vega
 parser          = VegaOfficialNameParser
 release_uri     =
-data_uri        = script:source=>ZFIN_ID,host=>ens-staging1,
+data_uri        = script:source=>ZFIN_ID,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>ZFIN_ID,chost=>ens-production,cdbname=>mr6_danio_core,vhost=>ens-production,vdbname=>mr6_danio_vega,
 
 [source ZFIN_ID::danio_rerio#03]
@@ -4150,7 +4150,7 @@ priority        = 1
 prio_descr      = curated with transcript number postfix
 parser          = curated_transcriptParser
 release_uri     =
-data_uri        = script:source=>ZFIN_ID,host=>ens-staging1,
+data_uri        = script:source=>ZFIN_ID,host=>mysql-ens-sta-1,port=>4519,
 #data_uri        = script:source=>ZFIN_ID,chost=>ens-production,cdbname=>mr6_danio_core,vdbname=>mr6_pig_vega,vhost=>ens-production,
 
 [source ZFIN_ID_trans_name]