Automatic merging of dev into master

* dev:
  transcript table in patch database now contains data genome_container test module updated to reflect the change

modules/t/test-genome-DBs/homo_sapiens/patch/genome_statistics.txt

@@ -10,5 +10,5 @@
 25	pseudogene_acnt	0	1	370	2013-11-28 09:42:06
 35	PredictionTranscript	18	1	392	2013-11-28 09:42:09
 34	coding_acnt	4	1	369	2013-11-28 09:42:06
-38	transcript	1	1	32	2013-11-28 09:42:06
-37	alt_transcript	0	1	33	2013-11-28 09:42:06
+38	transcript	6	1	32	2013-11-28 09:42:06
+37	alt_transcript	7	1	33	2013-11-28 09:42:06

modules/t/test-genome-DBs/homo_sapiens/patch/transcript.txt

-2047706	633682	8407	27515	112375275	112390889	1	7795363	ensembl	KNOWN	\N	1	127	0	2	2006	2009-08-05 14:27:16	0000-00-00 00:00:00
+transcript_id	gene_id	analysis_id	seq_region_id	seq_region_start	seq_region_end	seq_region_strand	display_xref_id	source	biotype	status	description	is_current	canonical_translation_id	stable_id	version	created_date	modified_date
+2047721	633694	8049	27516	24313554	24316773	-1	3361763	havana	protein_coding	KNOWN	NULL	1	1044677	ENST00000398344	4	2007-09-07 00:01:32	2009-08-05 14:27:16
+2047722	633694	8048	27516	24313554	24322019	-1	3361762	havana	protein_coding	KNOWN	NULL	1	1044678	ENST00000350608	3	2008-04-29 11:17:41	2009-08-05 14:27:16
+2047724	633694	8049	27516	24313559	24315372	-1	3361766	havana	protein_coding	PUTATIVE	NULL	1	1044679	ENST00000428792	1	2009-05-19 09:47:17	2009-05-19 09:47:17
+2047725	633694	8049	27516	24313567	24322660	-1	3361765	havana	protein_coding	PUTATIVE	NULL	1	1044680	ENST00000404092	1	2008-04-29 11:17:41	2008-04-29 11:17:41
+2047730	633694	8049	27516	24315293	24316648	-1	3361764	havana	protein_coding	PUTATIVE	NULL	1	1044681	ENST00000403754	3	2008-04-29 11:17:41	2009-08-05 14:27:16
+2047732	633694	8049	27516	24315293	24316648	-1	3361767	havana	protein_coding	PUTATIVE	NULL	1	1044682	ENST00000430101	2	2009-05-19 09:47:17	2009-08-05 14:27:16
+2047743	633703	8048	1000759268	50202435	50208008	1	3423225	havana	protein_coding	KNOWN	NULL	1	1044683	ENST00000282026	1	2008-04-29 11:17:41	2008-04-29 11:17:41
+2047745	633704	8049	1000759268	2537524	2571508	-1	3365094	havana	protein_coding	PUTATIVE	NULL	1	1044684	ENST00000319888	6	2008-04-29 11:17:41	2012-03-20 10:52:24
+2047747	633704	8049	1000759268	2537530	2554691	-1	3365098	havana	protein_coding	PUTATIVE	NULL	1	1044685	ENST00000576251	1	2012-03-20 10:52:24	2012-03-20 10:52:24
+2047750	633704	8048	1000759268	2538452	2571485	-1	3365096	havana	protein_coding	KNOWN	NULL	1	1044687	ENST00000574538	1	2012-03-20 10:52:24	2012-03-20 10:52:24
+2047753	633704	8049	1000759268	2554785	2571232	-1	3365099	havana	protein_coding	PUTATIVE	NULL	1	1044688	ENST00000577166	1	2012-03-20 10:52:24	2012-03-20 10:52:24
+2047755	633704	8049	1000759268	2567006	2571470	-1	3365097	havana	protein_coding	PUTATIVE	NULL	1	1044689	ENST00000574676	1	2012-03-20 10:52:24	2012-03-20 10:52:24
+2047748	633705	8048	1001161223	28962606	28973082	-1	3446810	LRG database	protein_coding	KNOWN	NULL	1	1044686	ENST00000426120	2	2009-05-19 09:47:17	2009-08-05 14:27:16