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Commit 547afd97 authored by Andreas Kusalananda Kähäri's avatar Andreas Kusalananda Kähäri
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Update documentation.

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......@@ -74,47 +74,47 @@ Usage:
$indent [-t table] [-t table] [-t ...] \\
$indent [-v]
-h / --host User database server host
-P / --port User database server port (optional, default is 3306)
-h / --host User database server host.
-P / --port User database server port (optional, default is 3306).
-u / --user User username (must have write-access)
-p / --pass User password
-u / --user User username (must have write-access).
-p / --pass User password.
-d / --database User database name or SQL pattern
-d / --database User database name or SQL pattern,
e.g. --database="homo_sapiens_rnaseq_62_37g"
or --database="%core_62%"
or --database="%core_62%".
-dp / --dumppath Dumpout path. Dump out tables into the specified
directory path.
-dp / --dumppath Dump path.
Back-up tables into the specified directory path.
--pattern User database by Perl regular expression
e.g. --pattern="^homo.*(rnaseq|vega)_62"
--pattern User database by Perl regular expression,
e.g. --pattern="^homo.*(rnaseq|vega)_62".
(-d/--database and --pattern are mutually exclusive)
--core=NN Preset pattern for Core-like databases in relase NN
--core=NN Preset pattern for Core-like databases in relase NN.
Specifying --core=62 is equivalent to using
--pattern="(cdna|core|otherfeatures|rnaseq|vega)_62"
--pattern="(cdna|core|otherfeatures|rnaseq|vega)_62".
-mh / --mhost Production database server host
(optional, default is 'ens-staging1')
(optional, default is 'ens-staging1').
-mP / --mport Production database server port
(optional, default is 3306)
(optional, default is 3306).
-mu / --muser Production database username (no write-access required)
(optional, default is 'ensro')
(optional, default is 'ensro').
-mp / --mpass Production database password
(optional, default is undefined)
(optional, default is undefined).
-md / --mdatabase Production database name
(optional, default is 'ensembl_production')
(optional, default is 'ensembl_production').
-t / --table A specific table to update, may occur several times,
must be one of the tables attrib_type, external_db,
misc_set, or unmapped_reason
misc_set, or unmapped_reason.
-v / --verbose Be verbose, display every SQL statement as they
are executed (on standard error)
are executed (on standard error).
USAGE_END
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