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ensembl-gh-mirror
ensembl
Commits
6f5d29bb
Commit
6f5d29bb
authored
12 years ago
by
Derek Wilson
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Updates for VectorBase species
parent
d28b985f
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Changes
1
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1 changed file
misc-scripts/xref_mapping/xref_config.ini
+45
-7
45 additions, 7 deletions
misc-scripts/xref_mapping/xref_config.ini
with
45 additions
and
7 deletions
misc-scripts/xref_mapping/xref_config.ini
+
45
−
7
View file @
6f5d29bb
...
...
@@ -242,10 +242,22 @@ download = Y
order
=
40
priority
=
1
prio_descr
=
parser
=
AedesCAPParser
#parser = AedesCAPParser
parser
=
VBCommunitySymbolParser
release_uri
=
data_uri
=
file:VB_Community_Annotation/Aedes_VB_Community_Annotation.fa
[source VB_Community_Annotation::culex_quinquefasciatus]
# Used by anopheles_gambiae
name
=
VB_Community_Annotation
download
=
Y
order
=
40
priority
=
1
prio_descr
=
parser
=
VBCommunitySymbolParser
release_uri
=
data_uri
=
file:VB_Community_Annotation/Culex_quinquefasciatus_symbols.txt
[source AedesGenBank::aedes_aegypti]
# Used by aedes_aegypti
name
=
AedesGenBank
...
...
@@ -266,7 +278,7 @@ priority = 1
prio_descr
=
parser
=
VBCommunitySymbolParser
release_uri
=
data_uri
=
file:VB_Community_Annotation/
xref_
Anopheles_
symbol_lookup
data_uri
=
file:VB_Community_Annotation/Anopheles_
gambiae_symbols.txt
[source ImmunoDB::anopheles_gambiae]
# Used by anopheles_gambiae
...
...
@@ -3688,6 +3700,28 @@ parser = VBPubMedParser
release_uri
=
data_uri
=
file:PubMed/PubMed_citations_Aedes_aegypti_Liverpool.txt
source
PUBMED::culex_quinquefasciatus]
# Used by Aedes aegypti
name
=
PUBMED
download
=
Y
order
=
40
priority
=
1
prio_descr
=
parser
=
VBPubMedParser
release_uri
=
data_uri
=
file:PubMed/PubMed_citations_Culex_quinquefasciatus_JHB.txt
[source PUBMED::ixodes_scapularis]
# Used by Aedes aegypti
name
=
PUBMED
download
=
Y
order
=
40
priority
=
1
prio_descr
=
parser
=
VBPubMedParser
release_uri
=
data_uri
=
file:PubMed/PubMed_citations_Ixodes_scapularis_Wikel.txt
[source Ribosomal_Protein_Gene_DB::anopheles_gambiae]
# Used by Anopheles gambiae
name
=
Ribosomal_Protein_Gene_DB
...
...
@@ -3720,7 +3754,7 @@ aliases = aaegypti, aedes, aedesaegypti
#source = AedesGenBank::aedes_aegypti
source
=
EntrezGene::MULTI
source
=
GO::MULTI
source
=
goslim_goa::
MULTI
source
=
goslim_goa::
EG
source
=
InterproGO::MULTI
source
=
Interpro::MULTI
source
=
UniGene::aedes_aegypti
...
...
@@ -3772,11 +3806,12 @@ source = Celera_Trans::anopheles_gambiae
source
=
VB_Community_Annotation::anopheles_gambiae
source
=
EntrezGene::MULTI
source
=
GO::MULTI
source
=
goslim_goa::
MULTI
source
=
goslim_goa::
EG
source
=
InterproGO::MULTI
source
=
Interpro::MULTI
source
=
RefSeq_dna::MULTI-invertebrate
source
=
RefSeq_peptide::MULTI-invertebrate
source
=
RefSeq_mRNA_predicted::MULTI
source
=
UniGene::anopheles_gambiae
source
=
Uniprot/SPTREMBL::MULTI
source
=
Uniprot/SWISSPROT::MULTI
...
...
@@ -4266,7 +4301,7 @@ taxonomy_id = 7176
aliases
=
cpipiens, culex, culexpipiens, culex quinquefasciatus, cquinquefasciatus, culexquinquefasciatus
source
=
EntrezGene::MULTI
source
=
GO::MULTI
source
=
goslim_goa::
MULTI
source
=
goslim_goa::
EG
source
=
Interpro::MULTI
source
=
UniGene::culex_quinquefasciatus
source
=
Uniprot/SPTREMBL::MULTI
...
...
@@ -4275,6 +4310,8 @@ source = Uniprot/SWISSPROT::MULTI
source
=
ImmunoDB::culex_quinquefasciatus
source
=
VB_External_Description::culex_quinquefasciatus
source
=
VB_RNA_Description::culex_quinquefasciatus
source
=
VB_Community_Annotation::culex_quinquefasciatus
source
=
PUBMED::culex_quinquefasciatus
[species danio_rerio]
taxonomy_id
=
7955
...
...
@@ -4697,12 +4734,13 @@ aliases = ixodes, ixodesscapularis, ixodes scapularis
source
=
VB_External_Description::ixodes_scapularis
source
=
EntrezGene::MULTI
source
=
GO::MULTI
source
=
goslim_goa::
MULTI
source
=
goslim_goa::
EG
source
=
InterproGO::MULTI
source
=
Interpro::MULTI
source
=
UniGene::ixodes_scapularis
source
=
Uniprot/SPTREMBL::MULTI
source
=
Uniprot/SWISSPROT::MULTI
sources
=
PUBMED::ixodes_scapularis
[species loxodonta_africana]
taxonomy_id
=
9785
...
...
@@ -4931,7 +4969,7 @@ taxonomy_id = 121225
aliases
=
pediculushumanus, pediculus, phumanus
source
=
EntrezGene::MULTI
source
=
GO::MULTI
source
=
goslim_goa::
MULTI
source
=
goslim_goa::
EG
source
=
InterproGO::MULTI
source
=
Interpro::MULTI
source
=
UniGene::aedes_aegypti
...
...
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