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Commit 6f5d29bb authored by Derek Wilson's avatar Derek Wilson
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Updates for VectorBase species

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......@@ -242,10 +242,22 @@ download = Y
order = 40
priority = 1
prio_descr =
parser = AedesCAPParser
#parser = AedesCAPParser
parser = VBCommunitySymbolParser
release_uri =
data_uri = file:VB_Community_Annotation/Aedes_VB_Community_Annotation.fa
[source VB_Community_Annotation::culex_quinquefasciatus]
# Used by anopheles_gambiae
name = VB_Community_Annotation
download = Y
order = 40
priority = 1
prio_descr =
parser = VBCommunitySymbolParser
release_uri =
data_uri = file:VB_Community_Annotation/Culex_quinquefasciatus_symbols.txt
[source AedesGenBank::aedes_aegypti]
# Used by aedes_aegypti
name = AedesGenBank
......@@ -266,7 +278,7 @@ priority = 1
prio_descr =
parser = VBCommunitySymbolParser
release_uri =
data_uri = file:VB_Community_Annotation/xref_Anopheles_symbol_lookup
data_uri = file:VB_Community_Annotation/Anopheles_gambiae_symbols.txt
[source ImmunoDB::anopheles_gambiae]
# Used by anopheles_gambiae
......@@ -3688,6 +3700,28 @@ parser = VBPubMedParser
release_uri =
data_uri = file:PubMed/PubMed_citations_Aedes_aegypti_Liverpool.txt
source PUBMED::culex_quinquefasciatus]
# Used by Aedes aegypti
name = PUBMED
download = Y
order = 40
priority = 1
prio_descr =
parser = VBPubMedParser
release_uri =
data_uri = file:PubMed/PubMed_citations_Culex_quinquefasciatus_JHB.txt
[source PUBMED::ixodes_scapularis]
# Used by Aedes aegypti
name = PUBMED
download = Y
order = 40
priority = 1
prio_descr =
parser = VBPubMedParser
release_uri =
data_uri = file:PubMed/PubMed_citations_Ixodes_scapularis_Wikel.txt
[source Ribosomal_Protein_Gene_DB::anopheles_gambiae]
# Used by Anopheles gambiae
name = Ribosomal_Protein_Gene_DB
......@@ -3720,7 +3754,7 @@ aliases = aaegypti, aedes, aedesaegypti
#source = AedesGenBank::aedes_aegypti
source = EntrezGene::MULTI
source = GO::MULTI
source = goslim_goa::MULTI
source = goslim_goa::EG
source = InterproGO::MULTI
source = Interpro::MULTI
source = UniGene::aedes_aegypti
......@@ -3772,11 +3806,12 @@ source = Celera_Trans::anopheles_gambiae
source = VB_Community_Annotation::anopheles_gambiae
source = EntrezGene::MULTI
source = GO::MULTI
source = goslim_goa::MULTI
source = goslim_goa::EG
source = InterproGO::MULTI
source = Interpro::MULTI
source = RefSeq_dna::MULTI-invertebrate
source = RefSeq_peptide::MULTI-invertebrate
source = RefSeq_mRNA_predicted::MULTI
source = UniGene::anopheles_gambiae
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
......@@ -4266,7 +4301,7 @@ taxonomy_id = 7176
aliases = cpipiens, culex, culexpipiens, culex quinquefasciatus, cquinquefasciatus, culexquinquefasciatus
source = EntrezGene::MULTI
source = GO::MULTI
source = goslim_goa::MULTI
source = goslim_goa::EG
source = Interpro::MULTI
source = UniGene::culex_quinquefasciatus
source = Uniprot/SPTREMBL::MULTI
......@@ -4275,6 +4310,8 @@ source = Uniprot/SWISSPROT::MULTI
source = ImmunoDB::culex_quinquefasciatus
source = VB_External_Description::culex_quinquefasciatus
source = VB_RNA_Description::culex_quinquefasciatus
source = VB_Community_Annotation::culex_quinquefasciatus
source = PUBMED::culex_quinquefasciatus
[species danio_rerio]
taxonomy_id = 7955
......@@ -4697,12 +4734,13 @@ aliases = ixodes, ixodesscapularis, ixodes scapularis
source = VB_External_Description::ixodes_scapularis
source = EntrezGene::MULTI
source = GO::MULTI
source = goslim_goa::MULTI
source = goslim_goa::EG
source = InterproGO::MULTI
source = Interpro::MULTI
source = UniGene::ixodes_scapularis
source = Uniprot/SPTREMBL::MULTI
source = Uniprot/SWISSPROT::MULTI
sources = PUBMED::ixodes_scapularis
[species loxodonta_africana]
taxonomy_id = 9785
......@@ -4931,7 +4969,7 @@ taxonomy_id = 121225
aliases = pediculushumanus, pediculus, phumanus
source = EntrezGene::MULTI
source = GO::MULTI
source = goslim_goa::MULTI
source = goslim_goa::EG
source = InterproGO::MULTI
source = Interpro::MULTI
source = UniGene::aedes_aegypti
......
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