Updates for VectorBase species

misc-scripts/xref_mapping/xref_config.ini

@@ -242,10 +242,22 @@ download        = Y
 order           = 40
 priority        = 1
 prio_descr      =
-parser          = AedesCAPParser
+#parser          = AedesCAPParser
+parser          = VBCommunitySymbolParser
 release_uri     =
 data_uri        = file:VB_Community_Annotation/Aedes_VB_Community_Annotation.fa
 
+[source VB_Community_Annotation::culex_quinquefasciatus]
+# Used by anopheles_gambiae
+name            = VB_Community_Annotation
+download        = Y
+order           = 40
+priority        = 1
+prio_descr      =
+parser          = VBCommunitySymbolParser
+release_uri     =
+data_uri        = file:VB_Community_Annotation/Culex_quinquefasciatus_symbols.txt
+
 [source AedesGenBank::aedes_aegypti]
 # Used by aedes_aegypti
 name            = AedesGenBank
@@ -266,7 +278,7 @@ priority        = 1
 prio_descr      =
 parser          = VBCommunitySymbolParser
 release_uri     =
-data_uri        = file:VB_Community_Annotation/xref_Anopheles_symbol_lookup
+data_uri        = file:VB_Community_Annotation/Anopheles_gambiae_symbols.txt
 
 [source ImmunoDB::anopheles_gambiae]
 # Used by anopheles_gambiae
@@ -3688,6 +3700,28 @@ parser          = VBPubMedParser
 release_uri     =
 data_uri        = file:PubMed/PubMed_citations_Aedes_aegypti_Liverpool.txt
 
+source PUBMED::culex_quinquefasciatus]
+# Used by Aedes aegypti
+name            = PUBMED
+download        = Y
+order           = 40
+priority        = 1
+prio_descr      =
+parser          = VBPubMedParser
+release_uri     =
+data_uri        = file:PubMed/PubMed_citations_Culex_quinquefasciatus_JHB.txt
+
+[source PUBMED::ixodes_scapularis]
+# Used by Aedes aegypti
+name            = PUBMED
+download        = Y
+order           = 40
+priority        = 1
+prio_descr      =
+parser          = VBPubMedParser
+release_uri     =
+data_uri        = file:PubMed/PubMed_citations_Ixodes_scapularis_Wikel.txt
+
 [source Ribosomal_Protein_Gene_DB::anopheles_gambiae]
 # Used by Anopheles gambiae
 name            = Ribosomal_Protein_Gene_DB
@@ -3720,7 +3754,7 @@ aliases         = aaegypti, aedes, aedesaegypti
 #source          = AedesGenBank::aedes_aegypti
 source          = EntrezGene::MULTI
 source          = GO::MULTI
-source          = goslim_goa::MULTI
+source          = goslim_goa::EG
 source          = InterproGO::MULTI
 source          = Interpro::MULTI
 source          = UniGene::aedes_aegypti
@@ -3772,11 +3806,12 @@ source          = Celera_Trans::anopheles_gambiae
 source          = VB_Community_Annotation::anopheles_gambiae
 source          = EntrezGene::MULTI
 source          = GO::MULTI
-source          = goslim_goa::MULTI
+source          = goslim_goa::EG
 source          = InterproGO::MULTI
 source          = Interpro::MULTI
 source          = RefSeq_dna::MULTI-invertebrate
 source          = RefSeq_peptide::MULTI-invertebrate
+source          = RefSeq_mRNA_predicted::MULTI
 source          = UniGene::anopheles_gambiae
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
@@ -4266,7 +4301,7 @@ taxonomy_id     = 7176
 aliases         = cpipiens, culex, culexpipiens, culex quinquefasciatus, cquinquefasciatus, culexquinquefasciatus
 source          = EntrezGene::MULTI
 source          = GO::MULTI
-source          = goslim_goa::MULTI
+source          = goslim_goa::EG
 source          = Interpro::MULTI
 source          = UniGene::culex_quinquefasciatus
 source          = Uniprot/SPTREMBL::MULTI
@@ -4275,6 +4310,8 @@ source          = Uniprot/SWISSPROT::MULTI
 source		= ImmunoDB::culex_quinquefasciatus
 source		= VB_External_Description::culex_quinquefasciatus
 source		= VB_RNA_Description::culex_quinquefasciatus
+source      = VB_Community_Annotation::culex_quinquefasciatus
+source      = PUBMED::culex_quinquefasciatus
 
 [species danio_rerio]
 taxonomy_id     = 7955
@@ -4697,12 +4734,13 @@ aliases         = ixodes, ixodesscapularis, ixodes scapularis
 source          = VB_External_Description::ixodes_scapularis
 source          = EntrezGene::MULTI
 source          = GO::MULTI
-source          = goslim_goa::MULTI
+source          = goslim_goa::EG
 source          = InterproGO::MULTI
 source          = Interpro::MULTI
 source          = UniGene::ixodes_scapularis
 source          = Uniprot/SPTREMBL::MULTI
 source          = Uniprot/SWISSPROT::MULTI
+sources         = PUBMED::ixodes_scapularis
 
 [species loxodonta_africana]
 taxonomy_id     = 9785
@@ -4931,7 +4969,7 @@ taxonomy_id     = 121225
 aliases         = pediculushumanus, pediculus, phumanus
 source          = EntrezGene::MULTI
 source          = GO::MULTI
-source          = goslim_goa::MULTI
+source          = goslim_goa::EG
 source          = InterproGO::MULTI
 source          = Interpro::MULTI
 source          = UniGene::aedes_aegypti