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Commit 76a646f8 authored by Kieron Taylor's avatar Kieron Taylor :angry:
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POD cleanup

parent cb4537c1
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......@@ -28,7 +28,8 @@ Bio::EnsEMBL::Feature - Ensembl specific sequence feature.
-start => 100,
-end => 220,
-strand => -1,
-slice => $slice -analysis => $analysis
-slice => $slice,
-analysis => $analysis
);
my $start = $feat->start();
......@@ -273,7 +274,6 @@ sub strand {
Arg [1] : int start
Arg [2] : int end
Arg [3] : (optional) int strand
Example : None
Description: Sets the start, end and strand in one call rather than in
3 seperate calls to the start(), end() and strand() methods.
This is for convenience and for speed when this needs to be
......@@ -1412,7 +1412,7 @@ sub get_overlapping_Genes{
=head2 get_nearest_Gene
Description: Get all the nearest gene to the feature
Description: Get the nearest gene to the feature
Returntype : Bio::EnsEMBL::Gene
Caller : general
Status : UnStable
......@@ -1434,7 +1434,7 @@ sub get_nearest_Gene {
Example : $feature_summary = $feature->summary_as_hash();
Description : Retrieves a textual summary of this Feature.
Should be overidden by subclasses for specific tweaking
Should be overidden by subclasses for specific tweaking
Returns : hashref of arrays of descriptive strings
Status : Intended for internal use
=cut
......@@ -1474,7 +1474,7 @@ sub species {
=head2 contig
This method is deprecated and included for backwards compatibility only.
Deprecated - Included for backwards compatibility only.
Use slice() instead
=cut
sub contig {
......@@ -1486,7 +1486,7 @@ sub contig {
=head2 sub_SeqFeature
This method is deprecated and only for genebuild backwards compatibility.
Deprecated - For genebuild backwards compatibility.
Avoid using it if possible
=cut
sub sub_SeqFeature{
......@@ -1496,7 +1496,7 @@ sub sub_SeqFeature{
=head2 add_sub_SeqFeature
This method is deprecated and only for genebuild backwards compatibility.
Deprecated - only for genebuild backward compatibility.
Avoid using it if possible
=cut
sub add_sub_SeqFeature{
......@@ -1530,8 +1530,8 @@ sub add_sub_SeqFeature{
=head2 flush_sub_SeqFeature
This method is deprecated and only for genebuild backwards compatibility.
Avoid using it isf possible
Deprecated - Only for genebuild backwards compatibility.
Avoid using it if possible
=cut
sub flush_sub_SeqFeature {
my ($self) = @_;
......@@ -1572,7 +1572,7 @@ sub _deprecated_transform {
=head2 id
This method is deprecated and only included for backwards compatibility.
Deprecated - only included for backwards compatibility.
Use display_id, hseqname, dbID or stable_id instead
=cut
......
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