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ensembl-gh-mirror
ensembl
Commits
79abdb8b
Commit
79abdb8b
authored
13 years ago
by
Monika Komorowska
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Updated section on BasicMapper.pm
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misc-scripts/xref_mapping/xrefs_overview.txt
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misc-scripts/xref_mapping/xrefs_overview.txt
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79abdb8b
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@@ -126,8 +126,8 @@ Once all the mapping have been stored the display Xrefs and the
descriptions are generated for the transcripts and genes.
If you want to change any of the default settings you can create a new
'<species>.pm' for your particular species and override
the script
'BasicMapper.pm' (see 'rattus_norvegicus.pm' as an example).
'<species>.pm' for your particular species
, or '<taxon>.pm'
and override
the script
'BasicMapper.pm' (see 'rattus_norvegicus.pm' as an example).
The 'xref_mapper.pl' script needs a configuration file which has
information on the Xref database and the core database and also the
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@@ -148,6 +148,7 @@ password=xxxx
dir=./xref
species=homo_sapiens
taxon=mammalia (this is optional - use taxon if you need more than one species to use the same '<taxon>.pm' module)
host=ensembl-machine
port=3306
dbname=homo_sapiens_core_42_36d
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