Patch test databases

Includes recent Variation schema updates.

modules/t/test-genome-DBs/circ/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Mon Sep 16 14:07:21 2019
+-- Created on Fri Nov  1 15:18:23 2019
 -- 
 
 BEGIN TRANSACTION;
@@ -325,7 +325,7 @@ CREATE TABLE "external_db" (
   "status" enum NOT NULL DEFAULT 'KNOWNXREF',
   "priority" integer NOT NULL DEFAULT 0,
   "db_display_name" varchar(255),
-  "type" enum,
+  "type" enum NOT NULL,
   "secondary_db_name" varchar(255),
   "secondary_db_table" varchar(255),
   "description" text

modules/t/test-genome-DBs/circ/core/meta.txt

@@ -134,3 +134,4 @@
 134	\N	patch	patch_97_98_a.sql|schema_version
 135	\N	patch	patch_98_99_a.sql|schema_version
 136	\N	patch	patch_99_100_a.sql|schema_version
+137	\N	patch	patch_99_100_b.sql|alter_externaldb_type_notnull

modules/t/test-genome-DBs/homo_sapiens/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Mon Sep 16 14:07:27 2019
+-- Created on Fri Nov  1 15:18:46 2019
 -- 
 
 BEGIN TRANSACTION;
@@ -325,7 +325,7 @@ CREATE TABLE "external_db" (
   "status" enum NOT NULL DEFAULT 'KNOWNXREF',
   "priority" integer NOT NULL DEFAULT 0,
   "db_display_name" varchar(255),
-  "type" enum,
+  "type" enum NOT NULL,
   "secondary_db_name" varchar(255),
   "secondary_db_table" varchar(255),
   "description" text

modules/t/test-genome-DBs/homo_sapiens/core/external_db.txt

@@ -108,4 +108,4 @@
 4000	MEDLINE	1	KNOWN	5	MEDLINE	LIT	\N	\N	\N
 4100	UniGene	1	KNOWN	5	UniGene	MISC	\N	\N	\N
 4200	RFAM	1	XREF	5	RFAM	MISC	\N	\N	\N
-11000	UCSC	\N	KNOWNXREF	100	UCSC Stable ID	MISC	\N	\N	\N
+11000	UCSC		KNOWNXREF	100	UCSC Stable ID	MISC	\N	\N	\N

modules/t/test-genome-DBs/homo_sapiens/core/meta.txt

@@ -113,3 +113,4 @@
 180	\N	patch	patch_97_98_a.sql|schema_version
 188	\N	patch	patch_98_99_a.sql|schema_version
 189	\N	patch	patch_99_100_a.sql|schema_version
+190	\N	patch	patch_99_100_b.sql|alter_externaldb_type_notnull

modules/t/test-genome-DBs/homo_sapiens/empty/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Mon Sep 16 14:07:32 2019
+-- Created on Fri Nov  1 15:19:08 2019
 -- 
 
 BEGIN TRANSACTION;
@@ -325,7 +325,7 @@ CREATE TABLE "external_db" (
   "status" enum NOT NULL DEFAULT 'KNOWNXREF',
   "priority" integer NOT NULL DEFAULT 0,
   "db_display_name" varchar(255),
-  "type" enum,
+  "type" enum NOT NULL,
   "secondary_db_name" varchar(255),
   "secondary_db_table" varchar(255),
   "description" text

modules/t/test-genome-DBs/homo_sapiens/empty/meta.txt

@@ -113,3 +113,4 @@
 162	\N	patch	patch_97_98_a.sql|schema_version
 163	\N	patch	patch_98_99_a.sql|schema_version
 164	\N	patch	patch_99_100_a.sql|schema_version
+165	\N	patch	patch_99_100_b.sql|alter_externaldb_type_notnull

modules/t/test-genome-DBs/homo_sapiens/patch/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Mon Sep 16 14:07:37 2019
+-- Created on Fri Nov  1 15:19:31 2019
 -- 
 
 BEGIN TRANSACTION;
@@ -325,7 +325,7 @@ CREATE TABLE "external_db" (
   "status" enum NOT NULL DEFAULT 'KNOWNXREF',
   "priority" integer NOT NULL DEFAULT 0,
   "db_display_name" varchar(255),
-  "type" enum,
+  "type" enum NOT NULL,
   "secondary_db_name" varchar(255),
   "secondary_db_table" varchar(255),
   "description" text

modules/t/test-genome-DBs/homo_sapiens/patch/meta.txt

@@ -118,3 +118,4 @@
 2125	\N	patch	patch_97_98_a.sql|schema_version
 2126	\N	patch	patch_98_99_a.sql|schema_version
 2127	\N	patch	patch_99_100_a.sql|schema_version
+2128	\N	patch	patch_99_100_b.sql|alter_externaldb_type_notnull

modules/t/test-genome-DBs/homo_sapiens/variation/meta.txt

 1	\N	schema_type	variation
-2	\N	schema_version	99
+2	\N	schema_version	100
 3	\N	patch	patch_84_85_a.sql|schema version
 4	\N	patch	patch_84_85_b.sql|create sample_synonym
 5	\N	patch	patch_84_85_c.sql|drop column moltype from variation_synonym
@@ -44,3 +44,8 @@
 44	\N	patch	patch_96_97_c.sql|add an unique index on the name column
 45	\N	patch	patch_97_98_a.sql|schema version
 46	\N	patch	patch_98_99_a.sql|schema_version
+47	\N	patch	patch_98_99_b.sql|Add the column data_source_attrib in the table variation_citation
+48	\N	patch	patch_98_99_c.sql|Increase the size of the title and doi columns in the publication table
+49	\N	patch	patch_98_99_d.sql|add key data_source_attrib
+50	\N	patch	patch_98_99_e.sql|Fix attrib ids in table variation_citation
+51	\N	patch	patch_99_100_a.sql|schema version

modules/t/test-genome-DBs/homo_sapiens/xref/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Mon Sep 16 14:07:38 2019
+-- Created on Fri Nov  1 15:19:32 2019
 -- 
 
 BEGIN TRANSACTION;

modules/t/test-genome-DBs/mapping/core/SQLite/table.sql

 -- 
 -- Created by SQL::Translator::Producer::SQLite
--- Created on Mon Sep 16 14:07:43 2019
+-- Created on Fri Nov  1 15:19:53 2019
 -- 
 
 BEGIN TRANSACTION;
@@ -325,7 +325,7 @@ CREATE TABLE "external_db" (
   "status" enum NOT NULL DEFAULT 'KNOWNXREF',
   "priority" integer NOT NULL DEFAULT 0,
   "db_display_name" varchar(255),
-  "type" enum,
+  "type" enum NOT NULL,
   "secondary_db_name" varchar(255),
   "secondary_db_table" varchar(255),
   "description" text

modules/t/test-genome-DBs/mapping/core/meta.txt

@@ -74,3 +74,4 @@
 167	\N	patch	patch_97_98_a.sql|schema_version
 168	\N	patch	patch_98_99_a.sql|schema_version
 169	\N	patch	patch_99_100_a.sql|schema_version
+170	\N	patch	patch_99_100_b.sql|alter_externaldb_type_notnull