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Commit 97b92d9d authored by Magali Ruffier's avatar Magali Ruffier
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removed source RefSeq_dna_predicted, which has been retired

parent 5cfc0a2c
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Showing with 1 addition and 6 deletions
misc-scripts/xref_mapping/XrefParser/RefSeqParser.pm
View file @ 97b92d9d
......@@ -38,8 +38,6 @@ sub run {
my $pred_peptide_source_id =
$self->get_source_id_for_source_name('RefSeq_peptide_predicted');
my $pred_dna_source_id =
$self->get_source_id_for_source_name('RefSeq_dna_predicted');
my $pred_mrna_source_id =
$self->get_source_id_for_source_name('RefSeq_mRNA_predicted','refseq');
my $pred_ncrna_source_id =
......@@ -51,7 +49,6 @@ sub run {
print "RefSeq_mRNA source ID = $mrna_source_id\n";
print "RefSeq_ncRNA source ID = $ncrna_source_id\n";
print "RefSeq_peptide_predicted source ID = $pred_peptide_source_id\n";
print "RefSeq_dna_predicted source ID = $pred_dna_source_id\n" ;
print "RefSeq_mRNA_predicted source ID = $pred_mrna_source_id\n" ;
print "RefSeq_ncRNA_predicted source ID = $pred_ncrna_source_id\n" ;
}
......@@ -63,7 +60,6 @@ sub run {
$self->create_xrefs( $peptide_source_id,
$dna_source_id,
$pred_peptide_source_id,
$pred_dna_source_id,
$mrna_source_id, $ncrna_source_id,
$pred_mrna_source_id, $pred_ncrna_source_id,
$file,
......@@ -102,7 +98,6 @@ sub run {
$self->set_release( $mrna_source_id, $release );
$self->set_release( $ncrna_source_id, $release );
$self->set_release( $pred_peptide_source_id, $release );
$self->set_release( $pred_dna_source_id, $release );
$self->set_release( $pred_mrna_source_id, $release );
$self->set_release( $pred_ncrna_source_id, $release );
}
......@@ -120,7 +115,7 @@ sub run {
sub create_xrefs {
my ($self, $peptide_source_id, $dna_source_id, $pred_peptide_source_id,
$pred_dna_source_id, $mrna_source_id, $ncrna_source_id,
$mrna_source_id, $ncrna_source_id,
$pred_mrna_source_id, $pred_ncrna_source_id, $file, $species_id ) = @_;
# Create a hash of all valid names for this species
......
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