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Commit 9a3942f0 authored by ens-carlos's avatar ens-carlos
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Removed commas that shouldn't be before "rusage" in mem reqs. It used to work with those

commas though.
parent 8a1b3f21
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......@@ -47,8 +47,8 @@ build_cache_concurrent_jobs = 25
;; LSF parameters
lsf_opt_run_small = "-q small"
lsf_opt_run = "-We 90 -M6000000 -R'select[linux && lustre && mem>6000],rusage[mem=6000]'"
lsf_opt_dump_cache = "-We 5 -M2000000 -R'select[linux && lustre && mem>2000],rusage[mem=2000]'"
lsf_opt_run = "-We 90 -M6000000 -R'select[linux && lustre && mem>6000] rusage[mem=6000]'"
lsf_opt_dump_cache = "-We 5 -M2000000 -R'select[linux && lustre && mem>2000] rusage[mem=2000]'"
transcript_score_threshold = 0.25
gene_score_threshold = 0.125
......@@ -60,10 +60,10 @@ exonerate_bytes_per_job = 250000
exonerate_concurrent_jobs = 200
exonerate_threshold = 0.5
exonerate_extra_params = '--bestn 100'
lsf_opt_exonerate = "-We 10 -M600000 -R'select[linux && lustre && mem>600],rusage[mem=600]'"
lsf_opt_exonerate = "-We 10 -M600000 -R'select[linux && lustre && mem>600] rusage[mem=600]'"
synteny_rescore_jobs = 20
lsf_opt_synteny_rescore = "-We 10 -M5000000 -R'select[linux && lustre && mem>5000],rusage[mem=5000]'"
lsf_opt_synteny_rescore = "-We 10 -M5000000 -R'select[linux && lustre && mem>5000] rusage[mem=5000]'"
;; StableIdMapper
mapping_types = gene,transcript,translation,exon
......
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