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Commit a0509436 authored by Glenn Proctor's avatar Glenn Proctor
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Added type column.

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misc-scripts/external_db/external_dbs.txt
+ 174
− 173
View file @ a0509436
......@@ -3,181 +3,182 @@
# Please separate fields in this file with TABS not spaces!
#
#
210 Anopheles_symbol 1 KNOWN 1 0 50 Anopheles symbol
300 BRIGGSAE_HYBRID 1 KNOWNXREF 1 0 5 Briggsae Hybrid
400 Celera_Gene 1 PRED 1 0 5 Celera gene
410 Celera_Pep 1 PRED 1 0 5 Celera peptide
420 Celera_Trans 1 PRED 1 0 5 Celera transcript
600 DROS_ORTH 1 ORTH 1 0 5 DROS ORTH
700 EMBL 1 KNOWNXREF 1 0 5 EMBL
701 EMBL_predicted 1 PRED 1 0 4 Predicted EMBL
800 flybase_gene_id 1 KNOWNXREF 1 0 5 Flybase Gene
801 flybase_translation_id 1 KNOWNXREF 1 0 5 Flybase translation ID
802 flybase_gff 1 KNOWNXREF 1 0 5 Flybase GFF
803 flybase_polypeptide_id 1 KNOWNXREF 1 0 5 Flybase Polypeptide ID
804 flybase_annotation_id 1 KNOWNXREF 1 0 5 Flybase Annotation ID
805 flybase_symbol 1 KNOWNXREF 1 0 50 Flybase Symbol
806 flybase_synonym 1 KNOWNXREF 1 0 5 Flybase Synonym
807 flybase_name 1 KNOWNXREF 1 0 5 Flybase Name
808 flybase_transcript_id 1 KNOWNXREF 1 0 5 Flybase transcript ID
810 gadfly_gene_cgid 1 XREF 1 0 10 Gadfly gene CGID
811 gadfly_transcript_cgid 1 XREF 1 0 10 Gadfly transcript CGID
812 gadfly_translation_cgid 1 XREF 1 0 10 Gadfly translation CGID
821 FlyBaseName_gene 1 XREF 1 0 5 FlyBaseName gene
824 FlyBaseName_translations 1 XREF 1 0 5 FlyBaseName translations
825 FlyBaseName_transcript 1 XREF 1 0 50 FlyBaseName transcript
826 FlyBaseCGID_gene 1 XREF 1 0 5 FlyBaseCGID gene
827 FlyBaseCGID_transcript 1 XREF 1 0 50 FlyBaseCGID transcript
900 GKB 1 XREF 1 0 5 GKB
1000 GO 1 KNOWNXREF 1 0 5 GO
1100 HUGO 1 KNOWNXREF 0 1 100 HGNC Symbol
1200 Interpro 1 XREF 1 0 5 Interpro
1300 EntrezGene 1 KNOWNXREF 1 0 10 EntrezGene
1400 MarkerSymbol 1 KNOWNXREF 1 1 50 MGI Symbol
1500 MIM 1 KNOWNXREF 1 0 5 MIM
1510 MIM_GENE 1 KNOWNXREF 1 0 5 MIM gene
1520 MIM_MORBID 1 KNOWNXREF 1 0 5 MIM disease
1600 PDB 1 KNOWNXREF 1 0 5 PDB
1700 protein_id 1 KNOWNXREF 1 0 5 Protein ID
1701 protein_id_predicted 1 PRED 1 0 4 Predicted Protein ID
1800 RefSeq_dna 1 KNOWN 1 0 25 RefSeq DNA
1805 RefSeq_dna_predicted 1 PRED 1 0 15 RefSeq DNA predicted
1810 RefSeq_peptide 1 KNOWN 1 0 26 RefSeq peptide
1815 RefSeq_peptide_predicted 1 PRED 1 0 16 RefSeq peptide predicted
1900 Sanger_Hver1_2_1 1 XREF 1 0 5 Sanger Hver 121
1901 Sanger_Hver1_3_1 1 XREF 1 0 5 Sanger Hver 131
1902 SNGR_Hver 1 XREF 1 0 5 Sanger Hver
1910 Sanger_Mver1_1_1 1 XREF 1 0 5 Sanger Hver 111
2000 Uniprot/SPTREMBL 1 KNOWN 1 0 20 UniProtKB/TrEMBL
2001 Uniprot/SPTREMBL_predicted 1 PRED 1 0 15 Predicted UniProtKB/TrEMBL
2010 prediction_SPTREMBL 1 XREF 1 1 10 Prediction UniProtKB/TrEMBL
2100 Superfamily 1 KNOWNXREF 1 0 5 Superfamily
2200 Uniprot/SWISSPROT 1 KNOWN 1 1 30 UniProtKB/Swiss-Prot
2201 Uniprot/SWISSPROT_predicted 1 PRED 1 1 15 Predicted UniProtKB/Swiss-Prot
2202 Uniprot/Varsplic 1 KNOWN 1 1 15 UniprotKB/SpliceVariant
2300 Vega_gene 1 XREF 1 0 5 Vega gene
2310 Vega_transcript 1 XREF 1 0 5 Vega transcript
2320 Vega_translation 1 XREF 1 0 5 Vega translation
2400 wormbase_gene 1 KNOWN 1 0 5 Wormbase Gene
2410 wormbase_transcript 1 KNOWN 1 0 5 Wormbase Transcript
2420 wormpep_id 1 KNOWN 1 0 5 Wormpep ID
2430 wormbase_pseudogene 1 PSEUDO 1 0 5 Wormbase Pseudogene
2440 wormbase_locus 1 KNOWN 1 0 5 Wormbase Locus
2510 ZFIN_ID 1 KNOWNXREF 1 1 5 ZFIN
2530 ZFIN_xpat 1 KNOWNXREF 1 0 4 ZFIN expression patterns
2600 GeneDB 1 KNOWN 1 0 5 GeneDB
2601 cint_jgi_v1 1 KNOWN 1 0 10 JGI Gene ID (JGI 1.0)
2602 cint_jgi_v2 1 KNOWN 1 0 5 JGI Gene ID (JGI 2.0)
2610 cint_aniseed_v1 1 KNOWN 1 0 5 ANISEED (JGI 1.0)
2611 cint_aniseed_v2 1 KNOWN 1 0 5 ANISEED (JGI 2.0)
2700 Ens_Hs_gene 1 XREF 1 0 5 Ensembl Human Gene
2710 Ens_Hs_transcript 1 XREF 1 0 5 Ensembl Human Transcript
2720 Ens_Hs_translation 1 XREF 1 0 5 Ensembl Human Translation
2800 RGD 1 KNOWNXREF 1 0 50 RGD Symbol
2900 Genoscope_pred_gene 1 XREF 1 0 38 Genoscope pred gene
2910 Genoscope_pred_transcript 1 XREF 1 0 39 Genoscope pred transcript
2920 Genoscope_annotated_gene 1 KNOWN 1 0 40 Genoscope annotated gene
3001 AFFY_MG_U74_all 1 XREF 1 0 1 Affymx Microarray U74
3002 AFFY_MG_U74A 1 XREF 1 0 1 Affymx Microarray U74
3003 AFFY_MG_U74Av2 1 XREF 1 0 1 Affymx Microarray U74
3004 AFFY_MG_U74B 1 XREF 1 0 1 Affymx Microarray U74
3005 AFFY_MG_U74Bv2 1 XREF 1 0 1 Affymx Microarray U74
3006 AFFY_MG_U74C 1 XREF 1 0 1 Affymx Microarray U74
3007 AFFY_MG_U74Cv2 1 XREF 1 0 1 Affymx Microarray U74
3008 AFFY_MOE430_all 1 XREF 1 0 1 Affymx Microarray OE430
3009 AFFY_MOE430A 1 XREF 1 0 1 Affymx Microarray MOE430
3010 AFFY_MOE430B 1 XREF 1 0 1 Affymx Microarray MOE430
3011 AFFY_Mu11Ksub_all 1 XREF 1 0 1 Affymx Microarray Mu11
3012 AFFY_Mu11KsubA 1 XREF 1 0 1 Affymx Microarray Mu11
3013 AFFY_Mu11KsubB 1 XREF 1 0 1 Affymx Microarray Mu11
3014 AFFY_Mouse430_2 1 XREF 1 0 1 Affymx Microarray Mouse430
3015 AFFY_Mouse430A_2 1 XREF 1 0 1 Affymx Microarray Mouse430
3051 AFFY_RAE230_all 1 XREF 1 0 1 Affymx Microarray RAE230
3052 AFFY_RAE230A 1 XREF 1 0 1 Affymx Microarray RAE230
3053 AFFY_RAE230B 1 XREF 1 0 1 Affymx Microarray RAE230
3054 AFFY_RG_U34_all 1 XREF 1 0 1 Affymx Microarray U34
3055 AFFY_RG_U34A 1 XREF 1 0 1 Affymx Microarray U34
3056 AFFY_RG_U34B 1 XREF 1 0 1 Affymx Microarray U34
3057 AFFY_RG_U34C 1 XREF 1 0 1 Affymx Microarray U34
3058 AFFY_RN_U34 1 XREF 1 0 1 Affymx Microarray U34
3059 AFFY_RT_U34 1 XREF 1 0 1 Affymx Microarray U34
3101 AFFY_HG_U133_all 1 XREF 1 0 1 Affymx Microarray U133
3102 AFFY_HG_U133A 1 XREF 1 0 1 Affymx Microarray U133
3103 AFFY_HG_U133B 1 XREF 1 0 1 Affymx Microarray U133
3104 AFFY_HG_U95_all 1 XREF 1 0 1 Affymx Microarray U95
3105 AFFY_HG_U95A 1 XREF 1 0 1 Affymx Microarray U95
3106 AFFY_HG_U95Av2 1 XREF 1 0 1 Affymx Microarray U95
3107 AFFY_HG_U95B 1 XREF 1 0 1 Affymx Microarray U95
3108 AFFY_HG_U95C 1 XREF 1 0 1 Affymx Microarray U95
3109 AFFY_HG_U95D 1 XREF 1 0 1 Affymx Microarray U95
3110 AFFY_HG_U95E 1 XREF 1 0 1 Affymx Microarray U95
3111 AFFY_HG_U133_Plus_2 1 XREF 1 0 1 Affymx Microarray U133
3112 AFFY_HG_U133A_2 1 XREF 1 0 1 Affymx Microarray U133
3113 AFFY_HG_Focus 1 XREF 1 0 1 Affymx Microarray Focus
3114 AFFY_Rat230_2 1 XREF 1 0 1 Affymx Microarray Rat230
3115 AFFY_Zebrafish 1 XREF 1 0 1 Affymx Microarray Zebrafish
3116 AFFY_U133_X3P 1 XREF 1 0 1 Affymx Microarray U133
3117 AFFY_Canine 1 XREF 1 0 1 Affymx Microarray Canine
3118 AFFY_Chicken 1 XREF 1 0 1 Affymx Microarray Chicken
3119 AFFY_HuGeneFL 1 XREF 1 0 1 Affymx Microarray HuGeneFL
3120 AFFY_DrosGenome1 1 XREF 1 0 1 Affymx Microarray Drosophila
3121 AFFY_Drosophila_2 1 XREF 1 0 1 Affymx Microarray Drosophila2.0
3122 AFFY_HC_G110 1 XREF 1 0 1 Affymx Microarray HCG110
3123 AFFY_C_elegans 1 XREF 1 0 1 Affymx Microarray C Elegans
3124 AFFY_Plasmodium_Anopheles 1 XREF 1 0 1 Affymx Microarray Anopheles
3125 AFFY_Bovine 1 XREF 1 0 1 Affymx Microarray Bovine
3127 AFFY_YG_S98 1 XREF 1 0 1 Affymx Microarray YG-S98
3128 AFFY_Yeast_2 1 XREF 1 0 1 Affymx Microarray Yeast_2
3129 AFFY_Rhesus 1 XREF 1 0 1 Affymx Microarray R Macaque
3130 AFFY_CINT06a520380F 1 XREF 1 0 1 Affymx Microarray C Intestinalis CINT06a520380F
3200 VB_array 1 XREF 1 0 1 VectorBase Array
3201 ARRAY_EMBL_MMC1_20k_v1 1 XREF 1 0 1 VectorBase Array
3202 ARRAY_EMBL_MMC2_12k_v1 1 XREF 1 0 1 VectorBase Array
3203 ARRAY_JHU_GAM3_0_21k_v1 1 XREF 1 0 1 VectorBase Array
3204 ARRAY_LIV_GAMDETOX_0_25k_v1 1 XREF 1 0 1 VectorBase Array
3205 ARRAY_JHU_AEG1_0_20k_v1 1 XREF 1 0 1 VectorBase Array
3206 ARRAY_LIV_AEGDETOX_0_25k_v1 1 XREF 1 0 1 VectorBase Array
3207 ARRAY_ND_TIGRTC_9_6K_v1 1 XREF 1 0 1 VectorBase Array
3208 ARRAY_UCR_GillMgMT_0_2K_v2 1 XREF 1 0 1 VectorBase Array
3250 Illumina 1 XREF 1 0 1 Illumina
3251 AGILENT_G2518A 1 XREF 1 0 1 Agilent Microarray G2518A
3255 Illumina_V1 1 XREF 1 0 1 Illumina V1
3256 Illumina_V2 1 XREF 1 0 1 Illumina V2
3300 miRBase 1 KNOWNXREF 1 0 1 miRBase
3310 miRBase_predicted 1 XREF 1 0 1 miRBase predicted
3400 SGD 1 KNOWN 1 0 50 SGD
3500 IPI 1 KNOWN 1 0 5 IPI
3800 CCDS 1 KNOWN 1 0 50 CCDS
3900 PUBMED 1 KNOWN 1 0 5 Sequence Publications
4000 MEDLINE 1 KNOWN 1 0 5 MEDLINE
4100 UniGene 1 KNOWN 1 0 5 UniGene
4200 RFAM 1 XREF 1 0 5 RFAM
4300 AgilentProbe 1 XREF 1 0 5 Agilent Probe
4305 AgilentCGH 1 XREF 1 0 5 Agilent CGH
4400 Xenopus_Jamboree 1 KNOWN 1 0 1 Jamboree
4500 Tiffin 1 XREF 1 0 1 Tiffin DNA motifs
4600 OTTT 1 XREF 1 0 1 Havana transcripts
4650 shares_CDS_with 1 XREF 1 0 1 transcript having same CDS
4700 Medaka 1 XREF 1 0 1 Medaka Genome Project
4800 ENST 1 XREF 1 0 1 Ensembl transcripts
4900 TCAG 1 XREF 1 0 75 TCAG Chr 7 Annotation
5000 Ens_Mm_gene 1 XREF 1 0 40 Ensembl Mouse Gene
5020 Ens_Mm_translation 1 XREF 1 0 40 Ensembl Mouse Translation
5100 IMGT 1 XREF 1 0 7 IMGT/HLA
6000 Codelink 1 XREF 1 0 1 GE Healthcare/Amersham Codelink WGA
5200 Oxford_FGU_Md_gene 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions gene id
5300 Oxford_FGU_Md_tscript 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions transcript id
5400 Oxford_FGU_Oa_gene 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions gene id
5500 Oxford_FGU_Oa_tscript 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions transcript id
5700 Ens_Cf_gene 1 XREF 1 0 5 Ensembl Dog Gene
5710 Ens_Cf_transcript 1 XREF 1 0 5 Ensembl Dog Transcript
5720 Ens_Cf_translation 1 XREF 1 0 5 Ensembl Dog Translation
6100 Havana_gene 1 XREF 1 0 100 Havana gene ID
7159 AedesGenBank 1 PRED 1 0 30 Aedes GenBank
7200 IMGT/LIGM_DB 200641-6 XREF 1 1 10 IMGT/LIGM-DB
7201 IMGT/GENE_DB 200641-6 KNOWN 1 0 40 IMGT/GENE-DB
210 Anopheles_symbol 1 KNOWN 1 0 50 Anopheles symbol MISC
300 BRIGGSAE_HYBRID 1 KNOWNXREF 1 0 5 Briggsae Hybrid MISC
400 Celera_Gene 1 PRED 1 0 5 Celera gene MISC
410 Celera_Pep 1 PRED 1 0 5 Celera peptide MISC
420 Celera_Trans 1 PRED 1 0 5 Celera transcript MISC
600 DROS_ORTH 1 ORTH 1 0 5 DROS ORTH MISC
700 EMBL 1 KNOWNXREF 1 0 5 EMBL MISC
701 EMBL_predicted 1 PRED 1 0 4 Predicted EMBL MISC
800 flybase_gene_id 1 KNOWNXREF 1 0 5 Flybase Gene MISC
801 flybase_translation_id 1 KNOWNXREF 1 0 5 Flybase translation ID MISC
802 flybase_gff 1 KNOWNXREF 1 0 5 Flybase GFF MISC
803 flybase_polypeptide_id 1 KNOWNXREF 1 0 5 Flybase Polypeptide ID MISC
804 flybase_annotation_id 1 KNOWNXREF 1 0 5 Flybase Annotation ID MISC
805 flybase_symbol 1 KNOWNXREF 1 0 50 Flybase Symbol MISC
806 flybase_synonym 1 KNOWNXREF 1 0 5 Flybase Synonym MISC
807 flybase_name 1 KNOWNXREF 1 0 5 Flybase Name MISC
808 flybase_transcript_id 1 KNOWNXREF 1 0 5 Flybase transcript ID MISC
810 gadfly_gene_cgid 1 XREF 1 0 10 Gadfly gene CGID MISC
811 gadfly_transcript_cgid 1 XREF 1 0 10 Gadfly transcript CGID MISC
812 gadfly_translation_cgid 1 XREF 1 0 10 Gadfly translation CGID MISC
821 FlyBaseName_gene 1 XREF 1 0 5 FlyBaseName gene MISC
824 FlyBaseName_translations 1 XREF 1 0 5 FlyBaseName translations MISC
825 FlyBaseName_transcript 1 XREF 1 0 50 FlyBaseName transcript MISC
826 FlyBaseCGID_gene 1 XREF 1 0 5 FlyBaseCGID gene MISC
827 FlyBaseCGID_transcript 1 XREF 1 0 50 FlyBaseCGID transcript MISC
900 GKB 1 XREF 1 0 5 GKB MISC
1000 GO 1 KNOWNXREF 1 0 5 GO MISC
1100 HUGO 1 KNOWNXREF 0 1 100 HGNC Symbol MISC
1200 Interpro 1 XREF 1 0 5 Interpro MISC
1300 EntrezGene 1 KNOWNXREF 1 0 10 EntrezGene MISC
1400 MarkerSymbol 1 KNOWNXREF 1 1 50 MGI Symbol MISC
1500 MIM 1 KNOWNXREF 1 0 5 MIM MISC
1510 MIM_GENE 1 KNOWNXREF 1 0 5 MIM gene MISC
1520 MIM_MORBID 1 KNOWNXREF 1 0 5 MIM disease MISC
1600 PDB 1 KNOWNXREF 1 0 5 PDB MISC
1700 protein_id 1 KNOWNXREF 1 0 5 Protein ID MISC
1701 protein_id_predicted 1 PRED 1 0 4 Predicted Protein ID MISC
1800 RefSeq_dna 1 KNOWN 1 0 25 RefSeq DNA MISC
1805 RefSeq_dna_predicted 1 PRED 1 0 15 RefSeq DNA predicted MISC
1810 RefSeq_peptide 1 KNOWN 1 0 26 RefSeq peptide MISC
1815 RefSeq_peptide_predicted 1 PRED 1 0 16 RefSeq peptide predicted MISC
1900 Sanger_Hver1_2_1 1 XREF 1 0 5 Sanger Hver 121 MISC
1901 Sanger_Hver1_3_1 1 XREF 1 0 5 Sanger Hver 131 MISC
1902 SNGR_Hver 1 XREF 1 0 5 Sanger Hver MISC
1910 Sanger_Mver1_1_1 1 XREF 1 0 5 Sanger Hver 111 MISC
2000 Uniprot/SPTREMBL 1 KNOWN 1 0 20 UniProtKB/TrEMBL MISC
2001 Uniprot/SPTREMBL_predicted 1 PRED 1 0 15 Predicted UniProtKB/TrEMBL MISC
2010 prediction_SPTREMBL 1 XREF 1 1 10 Prediction UniProtKB/TrEMBL MISC
2100 Superfamily 1 KNOWNXREF 1 0 5 Superfamily MISC
2200 Uniprot/SWISSPROT 1 KNOWN 1 1 30 UniProtKB/Swiss-Prot MISC
2201 Uniprot/SWISSPROT_predicted 1 PRED 1 1 15 Predicted UniProtKB/Swiss-Prot MISC
2202 Uniprot/Varsplic 1 KNOWN 1 1 15 UniprotKB/SpliceVariant MISC
2300 Vega_gene 1 XREF 1 0 5 Vega gene MISC
2310 Vega_transcript 1 XREF 1 0 5 Vega transcript MISC
2320 Vega_translation 1 XREF 1 0 5 Vega translation MISC
2400 wormbase_gene 1 KNOWN 1 0 5 Wormbase Gene MISC
2410 wormbase_transcript 1 KNOWN 1 0 5 Wormbase Transcript MISC
2420 wormpep_id 1 KNOWN 1 0 5 Wormpep ID MISC
2430 wormbase_pseudogene 1 PSEUDO 1 0 5 Wormbase Pseudogene MISC
2440 wormbase_locus 1 KNOWN 1 0 5 Wormbase Locus MISC
2510 ZFIN_ID 1 KNOWNXREF 1 1 5 ZFIN PRIMARY_DB_SYN
2530 ZFIN_xpat 1 KNOWNXREF 1 0 4 ZFIN expression patterns MISC
2600 GeneDB 1 KNOWN 1 0 5 GeneDB MISC
2601 cint_jgi_v1 1 KNOWN 1 0 10 JGI Gene ID (JGI 1.0) MISC
2602 cint_jgi_v2 1 KNOWN 1 0 5 JGI Gene ID (JGI 2.0) MISC
2610 cint_aniseed_v1 1 KNOWN 1 0 5 ANISEED (JGI 1.0) MISC
2611 cint_aniseed_v2 1 KNOWN 1 0 5 ANISEED (JGI 2.0) MISC
2700 Ens_Hs_gene 1 XREF 1 0 5 Ensembl Human Gene MISC
2710 Ens_Hs_transcript 1 XREF 1 0 5 Ensembl Human Transcript MISC
2720 Ens_Hs_translation 1 XREF 1 0 5 Ensembl Human Translation MISC
2800 RGD 1 KNOWNXREF 1 0 50 RGD Symbol MISC
2900 Genoscope_pred_gene 1 XREF 1 0 38 Genoscope pred gene MISC
2910 Genoscope_pred_transcript 1 XREF 1 0 39 Genoscope pred transcript MISC
2920 Genoscope_annotated_gene 1 KNOWN 1 0 40 Genoscope annotated gene MISC
3001 AFFY_MG_U74_all 1 XREF 1 0 1 Affymx Microarray U74 ARRAY
3002 AFFY_MG_U74A 1 XREF 1 0 1 Affymx Microarray U74 ARRAY
3003 AFFY_MG_U74Av2 1 XREF 1 0 1 Affymx Microarray U74 ARRAY
3004 AFFY_MG_U74B 1 XREF 1 0 1 Affymx Microarray U74 ARRAY
3005 AFFY_MG_U74Bv2 1 XREF 1 0 1 Affymx Microarray U74 ARRAY
3006 AFFY_MG_U74C 1 XREF 1 0 1 Affymx Microarray U74 ARRAY
3007 AFFY_MG_U74Cv2 1 XREF 1 0 1 Affymx Microarray U74 ARRAY
3008 AFFY_MOE430_all 1 XREF 1 0 1 Affymx Microarray OE430 ARRAY
3009 AFFY_MOE430A 1 XREF 1 0 1 Affymx Microarray MOE430 ARRAY
3010 AFFY_MOE430B 1 XREF 1 0 1 Affymx Microarray MOE430 ARRAY
3011 AFFY_Mu11Ksub_all 1 XREF 1 0 1 Affymx Microarray Mu11 ARRAY
3012 AFFY_Mu11KsubA 1 XREF 1 0 1 Affymx Microarray Mu11 ARRAY
3013 AFFY_Mu11KsubB 1 XREF 1 0 1 Affymx Microarray Mu11 ARRAY
3014 AFFY_Mouse430_2 1 XREF 1 0 1 Affymx Microarray Mouse430 ARRAY
3015 AFFY_Mouse430A_2 1 XREF 1 0 1 Affymx Microarray Mouse430 ARRAY
3051 AFFY_RAE230_all 1 XREF 1 0 1 Affymx Microarray RAE230 ARRAY
3052 AFFY_RAE230A 1 XREF 1 0 1 Affymx Microarray RAE230 ARRAY
3053 AFFY_RAE230B 1 XREF 1 0 1 Affymx Microarray RAE230 ARRAY
3054 AFFY_RG_U34_all 1 XREF 1 0 1 Affymx Microarray U34 ARRAY
3055 AFFY_RG_U34A 1 XREF 1 0 1 Affymx Microarray U34 ARRAY
3056 AFFY_RG_U34B 1 XREF 1 0 1 Affymx Microarray U34 ARRAY
3057 AFFY_RG_U34C 1 XREF 1 0 1 Affymx Microarray U34 ARRAY
3058 AFFY_RN_U34 1 XREF 1 0 1 Affymx Microarray U34 ARRAY
3059 AFFY_RT_U34 1 XREF 1 0 1 Affymx Microarray U34 ARRAY
3101 AFFY_HG_U133_all 1 XREF 1 0 1 Affymx Microarray U133 ARRAY
3102 AFFY_HG_U133A 1 XREF 1 0 1 Affymx Microarray U133 ARRAY
3103 AFFY_HG_U133B 1 XREF 1 0 1 Affymx Microarray U133 ARRAY
3104 AFFY_HG_U95_all 1 XREF 1 0 1 Affymx Microarray U95 ARRAY
3105 AFFY_HG_U95A 1 XREF 1 0 1 Affymx Microarray U95 ARRAY
3106 AFFY_HG_U95Av2 1 XREF 1 0 1 Affymx Microarray U95 ARRAY
3107 AFFY_HG_U95B 1 XREF 1 0 1 Affymx Microarray U95 ARRAY
3108 AFFY_HG_U95C 1 XREF 1 0 1 Affymx Microarray U95 ARRAY
3109 AFFY_HG_U95D 1 XREF 1 0 1 Affymx Microarray U95 ARRAY
3110 AFFY_HG_U95E 1 XREF 1 0 1 Affymx Microarray U95 ARRAY
3111 AFFY_HG_U133_Plus_2 1 XREF 1 0 1 Affymx Microarray U133 ARRAY
3112 AFFY_HG_U133A_2 1 XREF 1 0 1 Affymx Microarray U133 ARRAY
3113 AFFY_HG_Focus 1 XREF 1 0 1 Affymx Microarray Focus ARRAY
3114 AFFY_Rat230_2 1 XREF 1 0 1 Affymx Microarray Rat230 ARRAY
3115 AFFY_Zebrafish 1 XREF 1 0 1 Affymx Microarray Zebrafish ARRAY
3116 AFFY_U133_X3P 1 XREF 1 0 1 Affymx Microarray U133 ARRAY
3117 AFFY_Canine 1 XREF 1 0 1 Affymx Microarray Canine ARRAY
3118 AFFY_Chicken 1 XREF 1 0 1 Affymx Microarray Chicken ARRAY
3119 AFFY_HuGeneFL 1 XREF 1 0 1 Affymx Microarray HuGeneFL ARRAY
3120 AFFY_DrosGenome1 1 XREF 1 0 1 Affymx Microarray Drosophila ARRAY
3121 AFFY_Drosophila_2 1 XREF 1 0 1 Affymx Microarray Drosophila2.0 ARRAY
3122 AFFY_HC_G110 1 XREF 1 0 1 Affymx Microarray HCG110 ARRAY
3123 AFFY_C_elegans 1 XREF 1 0 1 Affymx Microarray C Elegans ARRAY
3124 AFFY_Plasmodium_Anopheles 1 XREF 1 0 1 Affymx Microarray Anopheles ARRAY
3125 AFFY_Bovine 1 XREF 1 0 1 Affymx Microarray Bovine ARRAY
3127 AFFY_YG_S98 1 XREF 1 0 1 Affymx Microarray YG-S98 ARRAY
3128 AFFY_Yeast_2 1 XREF 1 0 1 Affymx Microarray Yeast_2 ARRAY
3129 AFFY_Rhesus 1 XREF 1 0 1 Affymx Microarray R Macaque ARRAY
3130 AFFY_CINT06a520380F 1 XREF 1 0 1 Affymx Microarray C Intestinalis CINT06a520380F ARRAY
3200 VB_array 1 XREF 1 0 1 VectorBase Array ARRAY
3201 ARRAY_EMBL_MMC1_20k_v1 1 XREF 1 0 1 VectorBase Array ARRAY
3202 ARRAY_EMBL_MMC2_12k_v1 1 XREF 1 0 1 VectorBase Array ARRAY
3203 ARRAY_JHU_GAM3_0_21k_v1 1 XREF 1 0 1 VectorBase Array ARRAY
3204 ARRAY_LIV_GAMDETOX_0_25k_v1 1 XREF 1 0 1 VectorBase Array ARRAY
3205 ARRAY_JHU_AEG1_0_20k_v1 1 XREF 1 0 1 VectorBase Array ARRAY
3206 ARRAY_LIV_AEGDETOX_0_25k_v1 1 XREF 1 0 1 VectorBase Array ARRAY
3207 ARRAY_ND_TIGRTC_9_6K_v1 1 XREF 1 0 1 VectorBase Array ARRAY
3208 ARRAY_UCR_GillMgMT_0_2K_v2 1 XREF 1 0 1 VectorBase Array ARRAY
3250 Illumina 1 XREF 1 0 1 Illumina ARRAY
3251 AGILENT_G2518A 1 XREF 1 0 1 Agilent Microarray G2518A ARRAY
3255 Illumina_V1 1 XREF 1 0 1 Illumina V1 ARRAY
3256 Illumina_V2 1 XREF 1 0 1 Illumina V2 ARRAY
3300 miRBase 1 KNOWNXREF 1 0 1 miRBase MISC
3310 miRBase_predicted 1 XREF 1 0 1 miRBase predicted MISC
3400 SGD 1 KNOWN 1 0 50 SGD MISC
3500 IPI 1 KNOWN 1 0 5 IPI MISC
3800 CCDS 1 KNOWN 1 0 50 CCDS MISC
3900 PUBMED 1 KNOWN 1 0 5 Sequence Publications LIT
4000 MEDLINE 1 KNOWN 1 0 5 MEDLINE LIT
4100 UniGene 1 KNOWN 1 0 5 UniGene MISC
4200 RFAM 1 XREF 1 0 5 RFAM MISC
4300 AgilentProbe 1 XREF 1 0 5 Agilent Probe ARRAY
4305 AgilentCGH 1 XREF 1 0 5 Agilent CGH ARRAY
4400 Xenopus_Jamboree 1 KNOWN 1 0 1 Jamboree MISC
4500 Tiffin 1 XREF 1 0 1 Tiffin DNA motifs MISC
4600 OTTT 1 XREF 1 0 1 Havana transcripts ALT_TRANS
4650 shares_CDS_with 1 XREF 1 0 1 transcript having same CDS ALT_TRANS
4700 Medaka 1 XREF 1 0 1 Medaka Genome Project MISC
4800 ENST 1 XREF 1 0 1 Ensembl transcripts MISC
4900 TCAG 1 XREF 1 0 75 TCAG Chr 7 Annotation MISC
5000 Ens_Mm_gene 1 XREF 1 0 40 Ensembl Mouse Gene MISC
5020 Ens_Mm_translation 1 XREF 1 0 40 Ensembl Mouse Translation MISC
5100 IMGT 1 XREF 1 0 7 IMGT/HLA MISC
6000 Codelink 1 XREF 1 0 1 GE Healthcare/Amersham Codelink WGA MISC
5200 Oxford_FGU_Md_gene 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions gene id ALT_TRANS
5300 Oxford_FGU_Md_tscript 1 PRED 1 0 1 Oxford Ponting Group Monodelphis predictions transcript id ALT_TRANS
5400 Oxford_FGU_Oa_gene 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions gene id ALT_TRANS
5500 Oxford_FGU_Oa_tscript 1 PRED 1 0 1 Oxford Ponting Group Platypus predictions transcript id ALT_TRANS
5700 Ens_Cf_gene 1 XREF 1 0 5 Ensembl Dog Gene MISC
5710 Ens_Cf_transcript 1 XREF 1 0 5 Ensembl Dog Transcript MISC
5720 Ens_Cf_translation 1 XREF 1 0 5 Ensembl Dog Translation MISC
6100 Havana_gene 1 XREF 1 0 100 Havana gene ID MISC
7159 AedesGenBank 1 PRED 1 0 30 Aedes GenBank MISC
7200 IMGT/LIGM_DB 200641-6 XREF 1 1 10 IMGT/LIGM-DB MISC
7201 IMGT/GENE_DB 200641-6 KNOWN 1 0 40 IMGT/GENE-DB MISC
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